Agly010389.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Aphis glycines
Gene Symbol
-
Assembly
GCA_009928515.1
Location
scaffold:270709-276875[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 28 0.079 6.7 7.5 0.3 1 21 39 59 39 60 0.95
2 28 8.2e-06 0.0007 20.0 3.4 1 23 95 117 95 117 0.98
3 28 5.1e-05 0.0043 17.5 2.7 1 23 123 145 123 145 0.98
4 28 0.00047 0.04 14.5 4.5 1 23 151 173 151 173 0.99
5 28 7.9e-06 0.00067 20.1 2.2 1 23 179 201 179 201 0.99
6 28 5.1e-07 4.3e-05 23.8 1.5 1 23 207 229 207 229 0.99
7 28 0.00027 0.023 15.2 2.0 1 23 235 257 235 257 0.95
8 28 5.3e-06 0.00045 20.6 2.1 1 23 263 285 263 285 0.97
9 28 2.8e-06 0.00024 21.5 0.4 1 23 291 313 291 313 0.97
10 28 0.74 63 4.4 6.4 3 23 438 460 436 460 0.82
11 28 7.8e-06 0.00066 20.1 1.9 1 23 466 488 466 488 0.99
12 28 1.1e-06 9.6e-05 22.7 0.7 1 23 494 516 494 516 0.99
13 28 7.5e-06 0.00064 20.1 4.6 1 23 522 544 522 544 0.99
14 28 0.00051 0.044 14.4 2.5 1 23 550 572 550 572 0.97
15 28 7.8e-05 0.0066 17.0 0.2 1 23 578 600 578 600 0.97
16 28 0.00069 0.058 14.0 2.7 1 23 626 648 626 648 0.98
17 28 1.1e-06 9.1e-05 22.8 0.8 1 23 654 676 654 676 0.98
18 28 3.2e-05 0.0028 18.1 0.5 1 23 682 704 682 704 0.99
19 28 5.8e-07 4.9e-05 23.7 0.5 1 23 710 732 710 732 0.99
20 28 0.00097 0.083 13.5 0.4 1 23 827 850 827 850 0.97
21 28 4.8e-06 0.00041 20.7 0.7 2 23 883 904 882 904 0.97
22 28 1.9e-06 0.00016 22.1 3.2 1 23 910 932 910 932 0.99
23 28 7.4e-05 0.0063 17.0 1.2 1 23 938 960 938 960 0.98
24 28 0.00089 0.076 13.6 2.2 1 23 966 989 966 989 0.98
25 28 0.0003 0.026 15.1 4.1 1 23 995 1017 995 1017 0.98
26 28 0.086 7.3 7.4 4.2 1 23 1023 1045 1023 1046 0.95
27 28 3.6e-06 0.00031 21.1 6.6 1 23 1068 1090 1068 1090 0.99
28 28 9.2e-07 7.8e-05 23.0 0.4 1 23 1096 1118 1096 1119 0.94

Sequence Information

Coding Sequence
ATGACAGAACACATTGCAAAAATATCAGGGGTTGAAAATGAATCATATCAAAATTCAATGAAGTCTAGACATATTGAAATAGATAAAGCCGAAATAGAAATTATTCCAGTAGAATATATATGTTATAAATGTAATGCTGTGTTCTACAAACGAATACAAATAGAGAAACATCTAAAATTATCCTGTTGTGAGGAGAAATGTTTAGATACTGATAAAGTAGTTCCTATTATCAAAAAATTACCAGGTTTATCAAAAAATGAATCTTATTTTCAATATAAACATCATCAATGTGAACTGTGTTCAAAATCTTTTACAAACAAGACAAAATTAGTTCAACATATTCAGACACATAGTGGGGTGAAACCATTTCGTTGTGAAACTTGTTATAGAGGTTTTTCTAATTCTTATAGTTTGAAAAGTCATGAAAAAACTCATACTGGCATAAAACCCTATAGATGTGATGTTTGTCAAAAAGCCTTTTCTCATTCACATATTTTAATAAATCATAAAAGAACTCATTCCGGAGAGAAACCATTTAAATGCGAATTTTGTCAAAAATGTTTTGCTACATCTGGAACGTTAGTAGCACACACACGTATACATACAGGTGAACAGCCATATAAATGCGATATATGTCAAAAAATGTTTTCCTTATCAAGCAGTTTAAATGCTCATAAAAGAACACATACAGGAGACAAACCGCACAAATGTATTTTTTGTTCAAAAGCATTTGTAAAGAGTGGTGACTTGGAACGGCATTTGCGAACCCATACAGGTGTAAAACCGTTTCATTGCGATTTGTGTGATAAATCTTTTACACAGTCATCTGGGTTGATTATTCATAAAAGAAACCACACTGGGGAAAGACCATTTGCATGTGATACATGCGAACGGTCATTTACTAATTCAGCTAGTTTAATTGCACACAAGCGAACTCATACAGGAGAAATACCTCATATGCCACTACATGTTCTAAATGTACAACAGATTTCCAATACTCAAAACAGTATGCAAAAAAATATTTTTTCAGAAATACCTACATCATCTACAACAGGTTTATGGGACACTAATGTTCCAACACCATCAGTTGGAGATTTTAGTTACAGTTGGTCAAATTGGTTTCAAAGTGAAACGGATCCTAATAACACTAAAGATCCCATTCAAAGTACTAATGAACTTACGGTACCATTTATGCAGCCTGTGTATAATGGAAGAGAAAACATGGGTAGTATGAATACAATAAACAGTGTAAGTATTTCATTGGACAATCATGTTGTACCTATCAAAAGACCTGAAGGTCGGTGGTTAGATTGTGATGTATGCCATAAGACTTTTCCTTATTCTTCCAGACATAAATTGATTGAACACCAACGGACACATACTCGTGAAAAACCATTTAAATGCTTTATATGTCAAAAATCATTTTCGTTGTCTAGTACCTTGATTGTACATAAAAGAATGCATACAGGAGAAAGACCATTCAAATGTGATTTATGTCCAAAAGCATTTGCGCAAAAATCAAAGCTAAATATACATAAAAGGATTCACACCGGTGTAAAACCATTTCGTTGTAATTTATGTCAAAAAACTTTTGCTCATTCTTCAAATTTGTCAGACCATAAGAAAACTCACACTCAAGAAAAACCGTATAAATGCGATATTTGCCACAAGTTGTTCACGTTGGCTAACAGCTTACGGAAACATAAAATATTACACTCCGGTTACAAACCATATGTATGTGAAGTCTGTCAAAAAGCATTTGCCAAAAAAGCTAGTTTAGATCGTCACAAGGGTACACATGACGGTGTACCGCAATGGACAAAACCATTTACGAACGGCGTTAAAGAAAAGCGGATGAATAATACTGATAAACCTTTTAAGTGTCATATTTGTTTTAAGTCGTTTGCTAGTGTAAATGGAATGACTAGACATACAGCCAAACATAACGGACAGGATCAATTTCAATGTGAAATTTGTAACAAGACTTTCACAAGTTTGTCAGTACTAGCTAGACACAAGCGAATACACACGGGTGAAAAACCATTTCAATGTGACTATTGTCCAAAAGCTTTCGCTTATTCATCAATACTAGTATCCCACCGACGCACTCATACCGGAGAGAAACCTTACCAGTGTGATCTTTGTCCCAAAGCATACACTCAATCCTCTAGCTTAATAGTTCACAAGCGAACACATTGGAACAATCATCAGCCGACCAATTCAGTCGAACATCCGACGACTGAACCACTAGCTCAACTGAGCACAACAAATCATTACGAATTACCAAACACGTCTGAGGCAGATGACTACACCGACAATTGGACGGGTTGGTATCCTAGCGAGCCTGATATATCTCTCGTCACGAACGAACTGCCCACCGAAGAGTCACCCGTACAAAACACGGTGGCCCAGTTTCCCGCTCAAACCGTGTCCACCGGCCAAAATGAGAAAATAGACGTAAACATGTTTCCCCAAAAGTTCAAGTGTGCCAAGTGCAAAGAAGCTTACGACGAGAGCTTTCAGCTGTTGAAACACATCAGGGAAGTGCACAGGTGCACTAGCGCGGTCAAAGCGCAAAAGACGTCCGCGTTGAAAAGCAACGACGCGGTCAAGCAGAAAAAGAAACGCGGCGAACGTCAACGATTGGAATGCGACATTTGCCAGCGGCCGTTCAACGACTCGTACAAACTGAAGGTGCACCGGAGAACGCACACCCGGGAAAAGCCGTTCAAATGCGACACTTGCGACAAGTCGTTCATCGACTCGTGCAACCTGAAGGAACACCAGAAGGTGCACACCGGCGAGAAGCTGTTCGAGTGCGACATATGCCAGAAGACGTTTCTGCAGCTGGGCACGTTGACGACGCACCGGCGCACGCACACCGGCGAGAAACCGTACACGTGCGACGTGTGCCACATGACTTTCGCGTTGCTGAGCAGCATGAAAACGCACAAGCGGCGGGCGCACACCGGCGAGAAACCGCACAAGTGCGACTTCTGTCAGAAAGCGTTCGTCAAGCGCAACGACATGGTCCGTCACCGGCGGACGCACACGGGCGAACGGCCGTTCGTGTGCGACATTTGCTGTCAGTCGTTCACCCAATCGTACGTGCTGGTGCTGCACAAGAGAAACCATCATTCGGCGGGCGACGTGGCCGCGGCCAACGACAAGCGTCCGGCTCCGGCGCCGCGGGACAAACCGTTCAAGTGCCACGTGTGCCACAAGTCGTTCGCCAGCCAGTCGACGTTGAACACTCACAGCCGAACGCACACGGGCGAAAAACCGTACACCTGCGACGAGTGCGGCAAATCGTTCACGCAATCGTCGGGCCTCGTGGCCCACAAGGCCGCACACCACCCCCCGTTGGACAAGACGTTCGGACACGCGCCGTACGCGTCCGGGGCGCCGACGGGAGCAGACCTCCTGCTCAGTACGTCGTGGCTCCGGACGTCCACAGGATACCTCAATACGCGGGCGACAGGACGTGCGAGTGCGCCGTGTGCCAGTCGTCGTTTGACCAGCCCGTTATCGCCGCTAACGAGCATTTCGGCCAACCCAACATCGCCGCCGCGATGTCTGACAGCAACGTGTATTACGGTTAGACGGGAATACGGTTAA
Protein Sequence
MTEHIAKISGVENESYQNSMKSRHIEIDKAEIEIIPVEYICYKCNAVFYKRIQIEKHLKLSCCEEKCLDTDKVVPIIKKLPGLSKNESYFQYKHHQCELCSKSFTNKTKLVQHIQTHSGVKPFRCETCYRGFSNSYSLKSHEKTHTGIKPYRCDVCQKAFSHSHILINHKRTHSGEKPFKCEFCQKCFATSGTLVAHTRIHTGEQPYKCDICQKMFSLSSSLNAHKRTHTGDKPHKCIFCSKAFVKSGDLERHLRTHTGVKPFHCDLCDKSFTQSSGLIIHKRNHTGERPFACDTCERSFTNSASLIAHKRTHTGEIPHMPLHVLNVQQISNTQNSMQKNIFSEIPTSSTTGLWDTNVPTPSVGDFSYSWSNWFQSETDPNNTKDPIQSTNELTVPFMQPVYNGRENMGSMNTINSVSISLDNHVVPIKRPEGRWLDCDVCHKTFPYSSRHKLIEHQRTHTREKPFKCFICQKSFSLSSTLIVHKRMHTGERPFKCDLCPKAFAQKSKLNIHKRIHTGVKPFRCNLCQKTFAHSSNLSDHKKTHTQEKPYKCDICHKLFTLANSLRKHKILHSGYKPYVCEVCQKAFAKKASLDRHKGTHDGVPQWTKPFTNGVKEKRMNNTDKPFKCHICFKSFASVNGMTRHTAKHNGQDQFQCEICNKTFTSLSVLARHKRIHTGEKPFQCDYCPKAFAYSSILVSHRRTHTGEKPYQCDLCPKAYTQSSSLIVHKRTHWNNHQPTNSVEHPTTEPLAQLSTTNHYELPNTSEADDYTDNWTGWYPSEPDISLVTNELPTEESPVQNTVAQFPAQTVSTGQNEKIDVNMFPQKFKCAKCKEAYDESFQLLKHIREVHRCTSAVKAQKTSALKSNDAVKQKKKRGERQRLECDICQRPFNDSYKLKVHRRTHTREKPFKCDTCDKSFIDSCNLKEHQKVHTGEKLFECDICQKTFLQLGTLTTHRRTHTGEKPYTCDVCHMTFALLSSMKTHKRRAHTGEKPHKCDFCQKAFVKRNDMVRHRRTHTGERPFVCDICCQSFTQSYVLVLHKRNHHSAGDVAAANDKRPAPAPRDKPFKCHVCHKSFASQSTLNTHSRTHTGEKPYTCDECGKSFTQSSGLVAHKAAHHPPLDKTFGHAPYASGAPTGADLLLSTSWLRTSTGYLNTRATGRASAPCASRRLTSPLSPLTSISANPTSPPRCLTATCITVRREYG