Rmai006681.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Rhopalosiphum maidis
Gene Symbol
-
Assembly
GCA_003676215.3
Location
NC:74878313-74884905[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 28 0.021 1.5 8.8 1.4 1 21 40 60 40 61 0.95
2 28 3.4e-06 0.00025 20.8 3.5 1 23 95 117 95 117 0.98
3 28 3.6e-05 0.0026 17.6 2.7 1 23 123 145 123 145 0.98
4 28 0.00019 0.013 15.3 4.5 1 23 151 173 151 173 0.99
5 28 3.7e-06 0.00026 20.7 2.9 1 23 179 201 179 201 0.99
6 28 3.6e-07 2.6e-05 23.8 1.5 1 23 207 229 207 229 0.99
7 28 0.00019 0.014 15.3 2.0 1 23 235 257 235 257 0.95
8 28 3.7e-06 0.00027 20.6 2.1 1 23 263 285 263 285 0.97
9 28 5.8e-07 4.1e-05 23.2 0.5 1 23 291 313 291 313 0.97
10 28 0.52 37 4.5 6.4 3 23 438 460 436 460 0.82
11 28 5.1e-06 0.00036 20.2 1.8 1 23 466 488 466 488 0.99
12 28 8e-07 5.7e-05 22.8 0.7 1 23 494 516 494 516 0.99
13 28 5.4e-05 0.0039 17.0 6.5 1 23 522 544 522 544 0.98
14 28 0.00037 0.026 14.4 2.5 1 23 550 572 550 572 0.97
15 28 5.6e-05 0.004 17.0 0.2 1 23 578 600 578 600 0.97
16 28 0.00049 0.035 14.0 2.7 1 23 626 648 626 648 0.98
17 28 6.1e-06 0.00043 20.0 0.6 1 23 654 676 654 676 0.98
18 28 2.3e-05 0.0017 18.2 0.5 1 23 682 704 682 704 0.99
19 28 4.1e-07 2.9e-05 23.7 0.5 1 23 710 732 710 732 0.99
20 28 0.0018 0.13 12.2 0.4 1 23 827 850 827 850 0.97
21 28 3.4e-06 0.00025 20.8 0.7 2 23 882 903 881 903 0.97
22 28 1.3e-06 9.5e-05 22.1 3.2 1 23 909 931 909 931 0.99
23 28 5.3e-05 0.0038 17.0 1.2 1 23 937 959 937 959 0.98
24 28 0.00063 0.045 13.6 2.2 1 23 965 988 965 988 0.98
25 28 0.00021 0.015 15.1 4.1 1 23 994 1016 994 1016 0.98
26 28 0.061 4.4 7.4 4.2 1 23 1022 1044 1022 1045 0.95
27 28 1.7e-05 0.0012 18.6 3.2 1 23 1065 1087 1065 1087 0.98
28 28 3.3e-05 0.0023 17.7 1.9 1 23 1093 1115 1093 1116 0.93

Sequence Information

Coding Sequence
ATGACAGAACACCTAGCAAAAACATTAGTGGTTGAAAATGAATCTtatcaaaattcaattaagTCTAGACATATTGAAATGGATAAAACTGAAGTAGAAACTAATTTTCCAGtagaatatatatgttataaatgtaatactgtATTCTATAAACGAATACACATAgagaaacatttaaaattatctttttgtGAGGGGAAATGTTTAGATACTGATAAAGTTcctataatcaaaaaattaccaggtttatcaaaaaatgaatctcattttcaatataaacatCACCAATGTGAACTTTGTTCAAAATCTTTTACAAACAagacaaaattaattcaacataTTCAGACACATAGTGGGGTAAAACCATTTCGTTGTGAAACTTGCTATAGAGGTTTTTCTAATTCTTACAGTTTGAAAAGTCATGAAAAAACTCATACTGGTATAAAACCTTATAGATGTGATATTTGTCAAAAAGCCTTTTCTCattcacatattttaataaaccataaaagAACTCACTCCGGAGAGAAACCATTTAAATgtgaattttgtcaaaaatgttttgctaCATCTGGAACGTTAGTGGCACATACACGTACACATACTGGTGAACAGCCATATAAATGTGATATATGTCAAAAAATGTTCTCCTTATCAAGCAGTTTAAATGCTCACAAAAGAACACATACAGGTGACAAACCtcacaaatgtattttttgttcaaaagCATTTGTAAAGAGTGGTGACTTAGAGCGGCATTTGCGAACTCATACAGGTGTAAAACCGTTTCATTGCGATTTGTGTGATAAATCTTTTACACAGTCGTCTGGCTTGATCATTCATAAAAGAAACCACACTGGCGAAAGACCATTTGCATGCGATACATGCGACCGGTCGTTTACGAATTCAGCTAGTTTAATAGCACATAAGCGAACTCATACAGGAGAAATACCTCATATGCCTCTACATGTCCTAAATGTTCAACAGATTTCTAATACTCAAAACACTatgcagaaaaatattttttcagaaataCCTACAACAGTTACAACAGGTTTATGGGACACTAGTGTTCCAACACCATCAGTTGGAGATTTTAGTTACAGTTGGTCAAATTGGTTTCAAAGTGAAACGGATCCTAATAACACTAAAGATCCAATTCAAAGTACCAATGAACTTTCGGTACCATTTATGCAGCCTGTGTTTAATGGGAGAGAAAACATTAGTAGtatgaatacaataaacaGTGTAAGTATTTCATTGGAGAATAATGTTGTACCCATCAAAAGACCCGAAGGCCGGTGGTTAGATTGTGATGTATGCCATAAGACTTTTCCTTATTCATCCAGACATAAATTGATTGAACACCAACGGACACATACCCgtgaaaaaccatttaaatgcTATATATGtcaaaaatcattttctttaTCTAGTACCTTGATCGTGCACAAAAGAATGCATACGGGAGAAAGGCCATTCAAATGTGATTTATGCCCAAAAGCATTTGCCCAAAAATCAAagctaaatatacataaaagaaTTCACACTGGTGTAAAACCATttcattgtaatttatgtCAAAAAACATTTGCCCATTCTTCAAATTTGTCAGACCATAAGAAAACCCACACCCAAGAAAGACCATATAAATGCGATATTTGCCACAAGTTATTCACGTTGGCTAACAGCTTAcggaaacataaaatattacactccGGTTACAAACCATATGTATGTGAAGTCTGTCAAAAAGCATTTGCCAAAAAAGCTAGTTTAGATCGCCATAAGGGTACACATGATGGTGTACCGCAATGGACAAAACCATTTACAAACAGCCTTAAAGAAAAGCGAATGAATAACATTGATAAGCCTTTTAAATgtcatatttgttttaagtcGTTTGCCAGTGTAAATGGAATGACTAGACATACAGCCAAACATAATGGACAAGATCAATTTCGATGTGAAATTTGTAACAAGACTTTCACGGGTTTGTCAGTACTAGCCAGACACAAACGAATACACACAGGTGAAAAACCATTTCAGTGTGACTATTGTCCTAAGGCTTTCGCTTATTCATCGATACTAGTATCTCACCGACGCACTCATACTGGAGAAAAACCTTACCAGTGTGATCTTTGTCCCAAAGCGTATACTCAATCCTCTAGTTTAATAGTTCATAAGCGAACACATTGGAACAATCATCAGCCAATTAACTCAATCGACCATCCAACGTCTGAACCACTTGCTCAACCAGGGACAACAAATCAATACGAATTACCAAATACATCAGAGGCCGATGACTACACTGACAATTGGTCGGGCTGGTATCCTAGCGAGCCTGATATATCTCTTGTCACAAATGAACTAGCCACTGAAGAGCCGTCTATACAAAACACAGTAACTCACTTTCCCACTCAAACTGTACCCAACAACCAAAATGAGAAAATAGACATAAACATGTTGCCGCAAAAATTCAAGTGCGCCAAGTGCAAAGAAGCTTATGACGAGAGCTTTATGTTATTGAAACACATTAGAGAAGTGCACAGGTCTAGCACAGTCAAAGTGAAAAAGACGTTCGCGTTTAAAAGCAACGACGTGGTCAAGCAGAAAAAGAAACGTGGCGAACGTCAACGATTGGAGTGCGATATTTGCCAACGACCGTTCAACGACTCGTACAAACTGAAAGTGCACCGGAGAACACACACTCGGGAGAAGCCGTTTAAATGTGACACGTGTGACAAGTCATTCATCGACTCGTGCAACCTCAAGGAACACCAGAAGGTGCACACCGGCGAGAAGCTGTTCGAGTGCGACATTTGTCAGAAGACGTTTTTGCAGCTGGGCACGTTGACAACGCACCGACGCACGCACACTGGCGAAAAGCCATACACCTGTGACGTGTGCCACATGACTTTCGCGTTGCTCAGTAGTATGAAGACGCACAAGCGGCGGGCACACACCGGCGAGAAGCCACATAAGTGTGATTTCTGCCAAAAGGCGTTCGTCAAGCGCAACGACATGGTCCGTCACCGGAGGACACACACGGGCGAACGGCCGTTCGTATGCGACATTTGCTGTCAATCGTTCACTCAATCGTACGTGCTGGTGCTACACAAAAGAAACCATCATTCGGGCGACGGGGCTGCGGTGAACAAGCGCCCGGCCGCGCCACCCCGAGACAAACCGTTCAAGTGCGGCGCCTGCCACAAATCGTTCGCCAGCCAGTCGACGTTGAACACGCACAACCGAACGCACACGGGCGAGAAACCATACCATTGCGACGAGTGCAGCAAATCGTTCACGCAATCGTCGGGCCTCGTGGCCCATAAGGCCGCACACCACGCGGCGGACAAGTCGTTCGGACACGCGTACGCGCCCGGCACCAGCAGTAGCGGACCTCAGTACGCCGCGGCTCCGGACGTCCACCTCCACAGGATACCTCAGTACGCAGGCGACAGGCCGTGCGAGTGTGCCGTGTGCCAATCGTCGTTTGGCCAGCCCGTTACCGTCATGAACGAGCACTTCAACCAACCCGTTGTCGCCCCTGTTATGTCTGTAGACAGCAACTTGTATTACGGTTAG
Protein Sequence
MTEHLAKTLVVENESYQNSIKSRHIEMDKTEVETNFPVEYICYKCNTVFYKRIHIEKHLKLSFCEGKCLDTDKVPIIKKLPGLSKNESHFQYKHHQCELCSKSFTNKTKLIQHIQTHSGVKPFRCETCYRGFSNSYSLKSHEKTHTGIKPYRCDICQKAFSHSHILINHKRTHSGEKPFKCEFCQKCFATSGTLVAHTRTHTGEQPYKCDICQKMFSLSSSLNAHKRTHTGDKPHKCIFCSKAFVKSGDLERHLRTHTGVKPFHCDLCDKSFTQSSGLIIHKRNHTGERPFACDTCDRSFTNSASLIAHKRTHTGEIPHMPLHVLNVQQISNTQNTMQKNIFSEIPTTVTTGLWDTSVPTPSVGDFSYSWSNWFQSETDPNNTKDPIQSTNELSVPFMQPVFNGRENISSMNTINSVSISLENNVVPIKRPEGRWLDCDVCHKTFPYSSRHKLIEHQRTHTREKPFKCYICQKSFSLSSTLIVHKRMHTGERPFKCDLCPKAFAQKSKLNIHKRIHTGVKPFHCNLCQKTFAHSSNLSDHKKTHTQERPYKCDICHKLFTLANSLRKHKILHSGYKPYVCEVCQKAFAKKASLDRHKGTHDGVPQWTKPFTNSLKEKRMNNIDKPFKCHICFKSFASVNGMTRHTAKHNGQDQFRCEICNKTFTGLSVLARHKRIHTGEKPFQCDYCPKAFAYSSILVSHRRTHTGEKPYQCDLCPKAYTQSSSLIVHKRTHWNNHQPINSIDHPTSEPLAQPGTTNQYELPNTSEADDYTDNWSGWYPSEPDISLVTNELATEEPSIQNTVTHFPTQTVPNNQNEKIDINMLPQKFKCAKCKEAYDESFMLLKHIREVHRSSTVKVKKTFAFKSNDVVKQKKKRGERQRLECDICQRPFNDSYKLKVHRRTHTREKPFKCDTCDKSFIDSCNLKEHQKVHTGEKLFECDICQKTFLQLGTLTTHRRTHTGEKPYTCDVCHMTFALLSSMKTHKRRAHTGEKPHKCDFCQKAFVKRNDMVRHRRTHTGERPFVCDICCQSFTQSYVLVLHKRNHHSGDGAAVNKRPAAPPRDKPFKCGACHKSFASQSTLNTHNRTHTGEKPYHCDECSKSFTQSSGLVAHKAAHHAADKSFGHAYAPGTSSSGPQYAAAPDVHLHRIPQYAGDRPCECAVCQSSFGQPVTVMNEHFNQPVVAPVMSVDSNLYYG

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00135580;
90% Identity
iTF_00135580;
80% Identity
iTF_01304351;