Pnig023250.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Pentalonia nigronervosa
Gene Symbol
-
Assembly
GCA_014851325.1
Location
scaffold:18766-25093[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 28 0.38 44 5.4 0.9 1 21 35 55 35 56 0.94
2 28 1.1e-05 0.0013 19.6 4.7 1 23 91 113 91 113 0.98
3 28 5.1e-05 0.0059 17.6 2.7 1 23 119 141 119 141 0.98
4 28 0.00045 0.052 14.6 4.4 1 23 147 169 147 169 0.99
5 28 5.5e-06 0.00063 20.6 3.0 1 23 175 197 175 197 0.99
6 28 1.3e-06 0.00015 22.5 2.5 1 23 203 225 203 225 0.99
7 28 0.00028 0.032 15.3 2.0 1 23 231 253 231 253 0.95
8 28 3.9e-06 0.00044 21.1 2.3 1 23 259 281 259 281 0.97
9 28 2.9e-06 0.00033 21.5 0.4 1 23 287 309 287 309 0.97
10 28 0.75 87 4.5 6.4 3 23 434 456 432 456 0.82
11 28 7.9e-06 0.00091 20.1 1.9 1 23 462 484 462 484 0.99
12 28 1.1e-06 0.00013 22.8 0.7 1 23 490 512 490 512 0.99
13 28 3.2e-05 0.0037 18.2 6.1 1 23 518 540 518 540 0.98
14 28 0.00059 0.068 14.2 1.6 1 23 546 568 546 568 0.96
15 28 4.4e-05 0.0051 17.8 0.2 1 23 574 596 574 596 0.97
16 28 0.00024 0.028 15.5 4.2 1 23 622 644 622 644 0.98
17 28 6.1e-06 0.0007 20.5 0.5 1 23 650 672 650 672 0.98
18 28 8.9e-05 0.01 16.8 2.4 1 23 678 700 678 700 0.99
19 28 5.9e-07 6.8e-05 23.7 0.5 1 23 706 728 706 728 0.99
20 28 0.00071 0.082 14.0 1.3 1 23 824 847 824 847 0.97
21 28 4.9e-06 0.00057 20.8 0.7 2 23 879 900 878 900 0.97
22 28 1.9e-06 0.00022 22.1 3.2 1 23 906 928 906 928 0.99
23 28 7.5e-05 0.0087 17.0 1.2 1 23 934 956 934 956 0.98
24 28 0.00091 0.1 13.6 2.2 1 23 962 985 962 985 0.98
25 28 0.00031 0.035 15.1 4.1 1 23 991 1013 991 1013 0.98
26 28 0.00057 0.066 14.3 2.2 1 23 1019 1041 1019 1042 0.95
27 28 2e-05 0.0023 18.9 2.4 1 23 1067 1089 1067 1089 0.98
28 28 3e-06 0.00035 21.4 1.3 1 23 1095 1117 1095 1118 0.94

Sequence Information

Coding Sequence
ATGACAGAACACCTTGCAAAAACATCAGTGGTTCAAAATCCAATTGAGTCCAGGCATATTGAAATGGATAAAGTTGAAGTAGAAACAATTTTTCCAGTAGAATATATATGTTATAAATGTAAGGCTGTATTCCACAAACGAATACAAATAGAAAAACATCTAAAATTATCTTATTGTGAGGAGAAATGTTTAGTTACTGATAAAATAGTTCCTATTATTAAGAAATTACCAGATTTGTCAAAAAATGAATCTTATTTTAAATATAAACATCATCAGTGTGAATTTTGTTCAAAATCTTTTACAAACAAGAAAAAATTGATTCAACATATTCAAACACATAGTGGAATAAAACCATTTCGTTGTGAAACTTGCTATAGAGGTTTTTCTAATTCTTACAGTTTGAAAAGCCATGAAAAAACTCATAATGGCATAAAACCTTATAGATGTGAAGTTTGTCAAAAAGCTTTTTCTCATTCACATATTTTAATAAATCATAAAAGAACTCATTCGGGAGAGAAACCGTTCAAATGTGATTTTTGTCAAAAATGTTTTGCTACATCTGGAACGTTAGTGGCACACACACGTACACATACAGGTGAACAGCCATATAAATGTGATGTATGTCAAAAAACATTTTCCTTATCAAGCAGTTTAAATTCACATAAAAGAACACATACTGGTGACAAACCCCACAAATGTATTTTTTGTTCAAAAGCATTTGTAAAAAGTGGTGACTTGGAGCGGCATTTGAGAACTCACACAGGTGTAAAACCATTTCACTGTGATATGTGTGATAAATCTTTTACACAGTCATCTGGCTTGATTATACACAAAAGAAACCATACAGGTGAAAGACCATTTGCGTGCGATACATGCGAACGGTCATTTACTAATTCAGCTAGTTTAATAGCACACAAGCGAACTCATACAGGAGAAATACCTCATATGCCTCTACATGTTCTAAATGTACAACAGATTTCAAATACACAAAACACTATGCAAAAAAACATTTTTTCTGAAATACCTACAACAACTACATCAGGTTTATGGGACACTAGTGTTCCAACTTCATCAGTTGGAGATTTTAGTTACAGTTGGTCAAATTGGTTTCAAAGTGAAACGGATCCTAATAACACTAAAGATCCAATTCAAAGTACTAATGAATTTCCGGTACCATTTTTGCAGCCTGTATATAATGGAAGAGAAAACATTGGTGGTATGATTACAATAAACAGTGTAAGTATTTCAACAGACAATAACGTTATACCTATAAAAAGACCCGAAGGTCGGTGGTTAGATTGTGATGTATGCCATAAGACTTTTCCTTATTCGTCCAGACATAAACTGATTGAACACCAACGGACACATACTCGTGAAAAACCATTTAAGTGCTTTATATGTCAAAAATCATTTTCTTTGTCTAGTACCTTGATTGTGCATAAAAGAATGCATACAGGAGAAAGGCCATTCAAATGCGATTTATGCCCAAAAGCATTTGCTCAAAAATCAAAGCTAAATATACATAAAAGGATTCACACTGGTGTGAAACCATTTCATTGTGATTTATGTCAAAAAACGTTTGCTCATTCTTCAAATCTGACGGACCATAAGAAAACTCACACTCATGAAAGACCATATGAATGTGATATTTGCCACAAGTTATTCACGCTAGCGAACAGTTTACGGAAACATAAAATATTGCATTCCGGTTACAAACCATATGTATGTGAAATTTGCCAAAAAGCGTTTGCCAAAAAAGCTAGTTTAGATCGTCACAAAGGTACACATGATGGCGTACCGCAATGGACCAAACCATTTACAAACGGCTTAAAAGAAAAGCGAACGAGTAATACCGATAAGCCTTTTAAATGCCATATTTGTTTCAAATCGTTTACTAGTTTAAATGGAATGACTAGACATACAGCCAAACATAATGGACAGGATCAATTTCAATGTGAAATTTGTAACAAGACTTTCACGGGTTTGTCAGTGCTAGCTAGACACAAACGAATACACACGGGTGAAAAGCCATTTCAGTGTGACTACTGTCACAAGGCTTTTGCGTATTCGTCAATTCTAGTATCTCACCGACGCACTCACACTGGGGAGAAACCTTACCAGTGTGATCTTTGTCCCAAAGCATACACTCAGTCGTCCAGTTTGATAGTTCATAAGCGAACCCACTGGAGCCACCATCAGCCAATCAACTCGATCGAACACCACCCGACGGCTGTGCCACTAGCCCAACCGAGGACAACAAATCAATACGAATTGCCAAATGCATCGGAGACGGACGACTACGCTGACAATTGGTCGGGCTGGTATCCCAGCGAGCCCGATATATCCCTAGTCACAAATGAACTGCCCGCCGAAGAGCCGCACTTGCAAAACGCAGTGGCCCACGTGCCCGCACAAACCGCCCTCAACAGCCACAATGAGAAAATGGACTTGATCATGTTGCCGCAGACGTTCAAGTGCGCCAAATGTAAAGAATCTTATGACGAGAGCCATCTGCTGCTGAAACACATTAGGGAAGTTCACAGGTCTAGCACGGTGAAAGCGAAAAAGACGTCCTCGTCGAAAGGCGACGACGCGGTCAAGCAGAAAAAGAAACGAGGCGAACGCCAGCGATTAGAATGCGACATTTGCCAACGGCCGTTCAACGACTCGTACAAACTGAAGGTGCACCGGCGAACGCACACCCGGGAGAAGCCATTCAAATGCGACACGTGTGACAAGTCGTTCATCGACTCGTGCAACCTGAAGGAACACCAGAAGGTGCACACCGGCGAGAAACTGTTCGAGTGCGACATATGCCAGAAGACGTTTCTGCAGCTGGGCACGTTGACCACGCACCGGCGAACGCACACCGGCGAGAAGCCGTACACCTGCGACGTGTGCCACATGACCTTCGCGTTGCTGAGCAGCATGAAGACGCACAAACGGCGCGCGCACACGGGCGAAAAGCCGCACAAGTGCGATTTCTGCCAAAAGGCGTTCGTCAAGCGCAACGACATGGTCCGGCATCGGAGGACGCACACGGGCGAACGGCCGTTCGTGTGCGACATTTGCCGTCAGTCGTTCACCCAGTCGTACGTGCTGGTGCTGCACAAGAGAAACCACCATTCGGGCGACGGCACCGGCCGGGCCGCGCCGACGACGAACAAGCGCCACGACGCGCCGCCCCGAGACAGGCCGTTCAAGTGCGGCGCGTGCCACAAGTCGTTCGCCAGCCAGTCGACGTTGAACATCCACAACCGGACGCACACGGGTGAAAAACCGTTCCACTGCGACGAGTGCGGCAAGTCGTTCACGCAATCGTCGGGTCTAGTGGCCCACAGGGCCGCCCACCACGTGTCGATCAAGCCGCCGTTCGGGCAAGCGGACGCGCTGGGCACCGGCGGGAGTAGACCCCAGTACGTCGCGGCCCCGGACGCCCACCGGATACCTCAGTACGCCGGCGACAGGCCGTGCCAGTGCGCCGTGTGCCAGTCGTCGTTCGGCCAGCCCGTTCCCGCCGTGAACGACGAGCTATTTGACCATCCCGTTGCCGTTGCCGCCGCGATGTCCGACAGCAGCATCTACTACGGTTAA
Protein Sequence
MTEHLAKTSVVQNPIESRHIEMDKVEVETIFPVEYICYKCKAVFHKRIQIEKHLKLSYCEEKCLVTDKIVPIIKKLPDLSKNESYFKYKHHQCEFCSKSFTNKKKLIQHIQTHSGIKPFRCETCYRGFSNSYSLKSHEKTHNGIKPYRCEVCQKAFSHSHILINHKRTHSGEKPFKCDFCQKCFATSGTLVAHTRTHTGEQPYKCDVCQKTFSLSSSLNSHKRTHTGDKPHKCIFCSKAFVKSGDLERHLRTHTGVKPFHCDMCDKSFTQSSGLIIHKRNHTGERPFACDTCERSFTNSASLIAHKRTHTGEIPHMPLHVLNVQQISNTQNTMQKNIFSEIPTTTTSGLWDTSVPTSSVGDFSYSWSNWFQSETDPNNTKDPIQSTNEFPVPFLQPVYNGRENIGGMITINSVSISTDNNVIPIKRPEGRWLDCDVCHKTFPYSSRHKLIEHQRTHTREKPFKCFICQKSFSLSSTLIVHKRMHTGERPFKCDLCPKAFAQKSKLNIHKRIHTGVKPFHCDLCQKTFAHSSNLTDHKKTHTHERPYECDICHKLFTLANSLRKHKILHSGYKPYVCEICQKAFAKKASLDRHKGTHDGVPQWTKPFTNGLKEKRTSNTDKPFKCHICFKSFTSLNGMTRHTAKHNGQDQFQCEICNKTFTGLSVLARHKRIHTGEKPFQCDYCHKAFAYSSILVSHRRTHTGEKPYQCDLCPKAYTQSSSLIVHKRTHWSHHQPINSIEHHPTAVPLAQPRTTNQYELPNASETDDYADNWSGWYPSEPDISLVTNELPAEEPHLQNAVAHVPAQTALNSHNEKMDLIMLPQTFKCAKCKESYDESHLLLKHIREVHRSSTVKAKKTSSSKGDDAVKQKKKRGERQRLECDICQRPFNDSYKLKVHRRTHTREKPFKCDTCDKSFIDSCNLKEHQKVHTGEKLFECDICQKTFLQLGTLTTHRRTHTGEKPYTCDVCHMTFALLSSMKTHKRRAHTGEKPHKCDFCQKAFVKRNDMVRHRRTHTGERPFVCDICRQSFTQSYVLVLHKRNHHSGDGTGRAAPTTNKRHDAPPRDRPFKCGACHKSFASQSTLNIHNRTHTGEKPFHCDECGKSFTQSSGLVAHRAAHHVSIKPPFGQADALGTGGSRPQYVAAPDAHRIPQYAGDRPCQCAVCQSSFGQPVPAVNDELFDHPVAVAAAMSDSSIYYG

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00135580;
90% Identity
-
80% Identity
-