Meup003544.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Macrosiphum euphorbiae
Gene Symbol
-
Assembly
GCA_949089665.1
Location
CARXXK010000001.1:44613643-44617254[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 28 0.42 55 6.4 0.6 1 21 40 60 40 61 0.95
2 28 2.6e-06 0.00035 22.8 3.3 1 23 96 118 96 118 0.98
3 28 2.7e-05 0.0035 19.6 2.8 1 23 124 146 124 146 0.99
4 28 0.0014 0.19 14.2 2.1 1 23 152 174 152 174 0.99
5 28 4.8e-06 0.00063 21.9 4.1 1 23 180 202 180 202 0.99
6 28 1.1e-05 0.0015 20.8 1.6 1 23 208 230 208 230 0.98
7 28 0.00065 0.085 15.2 2.0 1 23 236 258 236 258 0.95
8 28 9e-06 0.0012 21.1 2.3 1 23 264 286 264 286 0.97
9 28 5.7e-06 0.00075 21.7 0.6 1 23 292 314 292 314 0.97
10 28 1.7 2.3e+02 4.4 6.4 3 23 440 462 438 462 0.82
11 28 1.7e-05 0.0022 20.2 1.8 1 23 468 490 468 490 0.99
12 28 2.7e-06 0.00035 22.7 0.7 1 23 496 518 496 518 0.99
13 28 8.4e-05 0.011 18.0 4.9 1 23 524 546 524 546 0.98
14 28 0.0014 0.18 14.2 1.6 1 23 552 574 552 574 0.96
15 28 0.0001 0.013 17.8 0.2 1 23 580 602 580 602 0.97
16 28 0.0018 0.23 13.9 1.8 1 23 628 650 628 650 0.97
17 28 1.4e-05 0.0019 20.5 0.5 1 23 656 678 656 678 0.98
18 28 0.00021 0.027 16.8 2.4 1 23 684 706 684 706 0.99
19 28 1.4e-06 0.00018 23.7 0.5 1 23 712 734 712 734 0.99
20 28 0.0059 0.77 12.2 0.4 1 23 830 853 830 853 0.97
21 28 1.1e-05 0.0015 20.8 0.7 2 23 885 906 884 906 0.97
22 28 4.4e-06 0.00058 22.1 3.2 1 23 912 934 912 934 0.99
23 28 0.00018 0.023 17.0 1.2 1 23 940 962 940 962 0.98
24 28 0.0031 0.4 13.1 2.0 1 23 968 991 968 991 0.98
25 28 0.00071 0.093 15.1 4.1 1 23 997 1019 997 1019 0.98
26 28 0.0011 0.14 14.5 3.8 1 23 1025 1047 1025 1048 0.95
27 28 5.7e-05 0.0075 18.6 3.2 1 23 1073 1095 1073 1095 0.98
28 28 7e-06 0.00092 21.4 1.3 1 23 1101 1123 1101 1124 0.94

Sequence Information

Coding Sequence
ATGACAGAACACCTTGCAAAAACATCAGTGGTTCAAAATGAATTGTTTCAAATTCCAATTGAGTCCAGGCATATTGAAATGGATAAAGTTGAAGTAGAAACTATTTTCCCAGTagaatatatatgttataaatgtaaGGCTGTATACTACAAACGAACTCAAATAGAAAGACATCTAAAATTATCTTATTGTGGGGAGAAATGTATAGTTACAGATAAAGTAGTTCCTATTATTAAGAAACTACCAGGTTTGTCAAAAAatgaatcttattttaaatataaatatcaccaGTGTGAACTGTGTTCAAAGTCTTTTACGAACAAGTCAAAATTGATTCAACATATTCAGACACACAGTGGAGTGAAACCATTTCGTTGTGAAACTTGCTTTAAAGGTTTTTCTAATTCTTACAGTTTGAAGAGTCATGTAAAAACTCATTCTGGCATAAAACCTTATAGATGTGACATTTGTCAAAAGGCTTTTTCTctttcacatattttaataaatcataaaagaACTCATTCCGGAGAGAAACCATTTAAATGTGAATTTTGTCATAAATGTTTTGCTACATCTGGAACGTTAGTGGCACATATACGTACACATACAGGTGAACAGCCCTATAAATGTGATGTATGTCAAAAAACGTTTTCCTTATCAAGCAGTTTAAATTCACACAAAAGAGCCCATACAGGTGACAAACCtcacaaatgtattttttgttcaaaagcATTTGTAAAAAGTGGTGACTTGGAGCGTCATTTGCGAACTCATACAGGTGTAAAACCGTTTCATTGTGATATGTGTGATAAGTCTTTTACACAGTCGTCTGGATTGATCATACACAAAAGAAACCACACAGGTGAAAGACCATTTGCTTGTGATACGTGCCAACGATCATTTACTAATTCAGCTAGCTTAATAGCACACAAACGAACTCATACAGGAGAAATACCTCATATGCCTTTACATGTCCTAAATGTACAACAGATTTCAAATTCTCAAAATACTAtgcagaaaaatattttttcagaaatacCTACAACGTCTACAACAGGTTTATGGGACACTAGTGTTCAAACACCATCAGTTGGAGATTTTAGTTACAGTTGGTCAAATTGGTTTCAAAGTGAAACTGATCCTAATAATACTAAAGAAGATTCAATTCAAAGTACTATTGAACTTCCGGTACCATTTATTCAGCCTGTGTATAATGAGAGAGAAAACATTGGTGGTATGAATACAATAAACAGTCTAAGTATTTCATCAGAAAATACTGTTGTACCTATCAAAAGGCCCGAAGGTCGGTGGTTAGACTGTGATGTATGCCACAAGACTTTTCCTTATTCGTCCAGGCATAAACTGATTGAACACCAGCGGACACATACCCgtgaaaaaccatttaaatgcTATATATGTCAAAAATCATTTTCTTTATCTAGTACCTTGATTGTGCATAAAAGAATGCATACAGGAGAAAGGCCTTTCAAATGTGATTTATGCCCAAAAGCATTTGCTCAAAAGTCAAAgctaaatatacataaaagaaTTCATACCGGTGTAAAACCATTTCATTGTGATTTATGTCAAAAAACGTTTGCTCACTCTTCTAATCTGGCAGACCATAAGAAAACTCACACTCAAGAAAGACCATATGAATGTGATATTTGCCATAAGTTGTTTACGCTGGCAAACAGTTTAcggaaacataaaatattacattctgGTTATAAACCATATGTATGTGAAATATGTCAAAAAGCATTTGCCAAAAAAGCTAGTTTAGATCGTCACAAGGGTACACATGATGGTGTACCGCAATGGACCAAACCATTTACAAACGGTGCAAAAGAAAAGCGAATGACTAACACTGATAAGCCTTTTAAATGCCATATTTGTTTCAAGTCGTTTGCTAGTGTAAATGGAATGACTAGACATGCAGCCAAACATAACGGACTAGATCAGTTTCAGTGTGAAATTTGTAACAAGACTTTCACGGGTTTGTCAGTACTAGCTAGACACAAACGAATACACACGGGAGAAAAACCATTTCAGTGTGACTACTGTCACAAGGCGTTTGCTTATTCATCAATACTAGTATCTCACCGACGCACTCACACTGGGGAAAAACCTTACCAATGTGATCTTTGTCCCAAAGCTTATACTCAATCCTCCAGTTTAATAGTTCATAAGCGAACCCATTGGAACCACCAACAAGCAATTAACCCAATCGAACATCCAACGACTGTACCACTAGCCACTGTACCAAGGACAACAAATCAATACGAATTGCCAACTACTTCGGATGCAGACGACTACACCGACAATTGGTCGAGCTGGTATCCTAGCGAACCTGATATATCTCTTGTCACAAATGAACTGCCTACCGAAGAGCCACTCATTCAAAATACTGCAGTCCACTTACCCGTACAAACCGCGCCCACCGACCATAATGAGAAAATAGACTTACTCATGTTGCCGCAGAAGTTCAAGTGCGCCAAGTGTAAAGAAGCTTATGACGAGAGTTTTATGTTATTGAAACACATTAGGGAAGTGCACAGGTCTGTGACGGTCAAAGTGAAGAATACGTCCACGTTAAAAGCCGATGACGTGGTCAAGCGGAAAAAAAAACGTGGAGAACGTCAACGATTGGAATGCGACATTTGCCAACGGCCGTTTAACGACTCGTACAAACTGAAAGTTCACCGACGAACACACACCCGGGAGAAGCCGTTCAAATGCGACACGTGCGACAAGTCGTTCATCGACTCGTGCAACCTGAAGGAACATCAAAAGGTGCACACCGGCGAGAAACTGTTCGAGTGTGACATATGCCAGAAGACGTTTTTGCAGTTGGGCACATTGACCACGCATCGGCGCACGCACACCGGCGAAAAGCCGTACAGCTGTGACGTGTGCCACATGACTTTCGCGTTGCTGAGCAGCATGAAGACGCACAAGCGGCGAGCGCACACCGGCGAGAAGCCGCACAAGTGCGATTTCTGCCAGAAGGCGTTCGTTAAGCGCAACGACATGGTCCGGCACCGCAGGACGCACACGGGCGAACGGCCGTTCGTGTGCGACATTTGCCATCAGTCGTTCACCCAGTCGTACGTGCTGGTGCTGCACAAGAGAAACCACCATTCGGGCGACGGGACCGGCCCGGCCCCGCCGACGGACAAGACGTGTCGGTCCGCGCCGCCCCGAGACAAACCGTTCAAGTGCGGCGCGTGTCACAAGTCGTTCGCCAGTCAGTCGACGTTGAACACGCACAACCGGACGCACACGGGCGAAAAACCGTTCCACTGCGACGAGTGTGGCAAGTCGTTCACGCAGTCGTCGGGTCTAGTGGCCCATCGTGCCGCCCACCACTCGGCGAACAAGCCACCGTTCGGGGACGCGAACGCGCTCGACACGAACCAAAGCAGACCTCAGTACGCCGTGCAGGCCCCGGATATTCACAGGATACCTCAGTACGCCGGCGACAGGCCGTGCGAGTGCGCCGTGTGCCAGTCGTCGTTTATCCAGCCCGTTCCCGCCGTGATCGAGCACTTCGACCATCCCGTCGCGATCGCCCCCTCGATGTCCAACCGCAACATGTATTACGGTTAA
Protein Sequence
MTEHLAKTSVVQNELFQIPIESRHIEMDKVEVETIFPVEYICYKCKAVYYKRTQIERHLKLSYCGEKCIVTDKVVPIIKKLPGLSKNESYFKYKYHQCELCSKSFTNKSKLIQHIQTHSGVKPFRCETCFKGFSNSYSLKSHVKTHSGIKPYRCDICQKAFSLSHILINHKRTHSGEKPFKCEFCHKCFATSGTLVAHIRTHTGEQPYKCDVCQKTFSLSSSLNSHKRAHTGDKPHKCIFCSKAFVKSGDLERHLRTHTGVKPFHCDMCDKSFTQSSGLIIHKRNHTGERPFACDTCQRSFTNSASLIAHKRTHTGEIPHMPLHVLNVQQISNSQNTMQKNIFSEIPTTSTTGLWDTSVQTPSVGDFSYSWSNWFQSETDPNNTKEDSIQSTIELPVPFIQPVYNERENIGGMNTINSLSISSENTVVPIKRPEGRWLDCDVCHKTFPYSSRHKLIEHQRTHTREKPFKCYICQKSFSLSSTLIVHKRMHTGERPFKCDLCPKAFAQKSKLNIHKRIHTGVKPFHCDLCQKTFAHSSNLADHKKTHTQERPYECDICHKLFTLANSLRKHKILHSGYKPYVCEICQKAFAKKASLDRHKGTHDGVPQWTKPFTNGAKEKRMTNTDKPFKCHICFKSFASVNGMTRHAAKHNGLDQFQCEICNKTFTGLSVLARHKRIHTGEKPFQCDYCHKAFAYSSILVSHRRTHTGEKPYQCDLCPKAYTQSSSLIVHKRTHWNHQQAINPIEHPTTVPLATVPRTTNQYELPTTSDADDYTDNWSSWYPSEPDISLVTNELPTEEPLIQNTAVHLPVQTAPTDHNEKIDLLMLPQKFKCAKCKEAYDESFMLLKHIREVHRSVTVKVKNTSTLKADDVVKRKKKRGERQRLECDICQRPFNDSYKLKVHRRTHTREKPFKCDTCDKSFIDSCNLKEHQKVHTGEKLFECDICQKTFLQLGTLTTHRRTHTGEKPYSCDVCHMTFALLSSMKTHKRRAHTGEKPHKCDFCQKAFVKRNDMVRHRRTHTGERPFVCDICHQSFTQSYVLVLHKRNHHSGDGTGPAPPTDKTCRSAPPRDKPFKCGACHKSFASQSTLNTHNRTHTGEKPFHCDECGKSFTQSSGLVAHRAAHHSANKPPFGDANALDTNQSRPQYAVQAPDIHRIPQYAGDRPCECAVCQSSFIQPVPAVIEHFDHPVAIAPSMSNRNMYYG

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00135580;
90% Identity
iTF_01032342;
80% Identity
-