Acrc027078.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Aphis craccivora
Gene Symbol
-
Assembly
GCA_009835225.1
Location
VUJU01002785.1:27296-31513[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 28 0.091 10 7.5 0.3 1 21 34 54 34 55 0.95
2 28 5.6e-06 0.00063 20.8 3.5 1 23 90 112 90 112 0.98
3 28 5.9e-05 0.0066 17.6 2.7 1 23 118 140 118 140 0.98
4 28 0.00054 0.061 14.5 4.5 1 23 146 168 146 168 0.99
5 28 8e-06 0.0009 20.3 4.0 1 23 174 196 174 196 0.99
6 28 5.9e-07 6.6e-05 23.8 1.5 1 23 202 224 202 224 0.99
7 28 0.00032 0.035 15.3 2.0 1 23 230 252 230 252 0.95
8 28 6.1e-06 0.00068 20.7 2.1 1 23 258 280 258 280 0.97
9 28 1e-05 0.0011 20.0 0.4 1 23 286 308 286 308 0.97
10 28 0.85 96 4.5 6.4 3 23 433 455 431 455 0.82
11 28 9e-06 0.001 20.1 1.9 1 23 461 483 461 483 0.99
12 28 1.3e-06 0.00015 22.8 0.7 1 23 489 511 489 511 0.99
13 28 8.8e-06 0.00098 20.2 4.6 1 23 517 539 517 539 0.99
14 28 0.0006 0.067 14.4 2.5 1 23 545 567 545 567 0.97
15 28 9e-05 0.01 17.0 0.2 1 23 573 595 573 595 0.97
16 28 0.0008 0.089 14.0 2.7 1 23 621 643 621 643 0.98
17 28 6.9e-06 0.00078 20.5 0.5 1 23 649 671 649 671 0.98
18 28 3.8e-05 0.0042 18.2 0.5 1 23 677 699 677 699 0.99
19 28 6.7e-07 7.5e-05 23.7 0.5 1 23 705 727 705 727 0.99
20 28 0.0011 0.13 13.5 0.4 1 23 824 847 824 847 0.97
21 28 5.6e-06 0.00063 20.8 0.7 2 23 879 900 878 900 0.97
22 28 2.2e-06 0.00024 22.1 3.2 1 23 906 928 906 928 0.99
23 28 8.6e-05 0.0096 17.0 1.2 1 23 934 956 934 956 0.98
24 28 0.001 0.12 13.6 2.2 1 23 962 985 962 985 0.98
25 28 0.00035 0.039 15.1 4.1 1 23 991 1013 991 1013 0.98
26 28 0.1 11 7.4 4.2 1 23 1019 1041 1019 1042 0.95
27 28 1.8e-06 0.0002 22.3 3.8 1 23 1062 1084 1062 1084 0.99
28 28 1e-06 0.00012 23.1 0.6 1 23 1090 1112 1090 1113 0.94

Sequence Information

Coding Sequence
ATGACAGAACACATTGCAAAAACATTAATGGTTGAAAATGAACCAtatcaaaattcaattaagTCCAGACATATTGAAATAGAAACTATTCCAGtagaatatatatgttataaatgtaatgcTGTGTTCTACAAACGAATACAAATAGAGaaacatctaaaattattCTGTTGTGAGGAGAAATGTTTGGATACTGATAAGTTAGTtcctattatcaaaaaattacccggtttatcaaaaaatgaatcttgttttcaatataaacaTCACCAATGTGAACTGTGTTCAAAATCTTTTACAAACAAGACAAAATTGATTCAACATATTCAGACACATAGTGGGGTGAAACCATTTCGTTGTGAAACTTGTTATAGAGGTTTTTCTAATTCTTATAGTTTGAAAAGTCATGAAAAAACTCATACTGGCATAAAACCCTATAGATGTGATGTTTGTCAAAAAGCCTTTTCTcattcacatattttaataaatcataaaagaaCTCATTCCGGAGAGAAACCatttaaatgcaaattttgtcaaaaatgttttgctACATCTGGAACGTTAGTAGCACACACACGTACACATACAGGTGAACAGCCATATAAATGCGATATatgtcaaaaaatgttttccttATCAAGCAGTTTAAATGCTCATAAAAGAACACATACAGGAGACAAACCGCACAAATgcattttttgttcaaaagcATTTGTAAAGAGTGGTGACTTGGAACGGCATTTGAGAACCCATACCGGTGTAAAACCGTTTCATTGCGATTTGTGTGATAAATCTTTTACACAGTCATCTGGCTTGATCATTCATAAAAGAAACCACACTGGGGAAAGACCATTTGCATGTGATTCATGCGAACGGTCATTTACTAATTCAGCTAGTCTAATAGCACACAAGCGAACTCATACAGGAGAAATACCTCATATGCCACTACATGTTCTAAATGTACAACAAATTTCCAATACTCAAAACagtatgcaaaaaaatattttttcagaaataccTACATCATCTACAACAGGTTTATGGGACACTAATGTTCAAACACCATCAGTTGGAGATTTTAGTTACAGTTGGTCAAATTGGTTTCAAAGTGAAACGGATCCTAATAACACTAAAGATCCCATTCAAAGTACTAATGAACTTTCGGTACCATTTATGCAGCCTGTGTATAATGGGAGAGAAAACATGGGTAGtatgaatacaataaacaGTGTAAGTATTTCATTGGACAATAATGTTGTACCTATCAAAAGACCTGAAGGTCGGTGGTTAGATTGTGATGTATGCCATAAGACTTTTCCTTATTCATCCAGACATAAATTGATTGAACACCAACGGACACATACTCGtgaaaaaccatttaaatgcTTTATATGTCAAAAATCATTTTCGTTGTCTAGTACCTTGATTGTACATAAAAGAATGCATACAGGAGAAAGACCATTCAAATGTGATTTATGTCCAAAAGCATTTGCGCAAAAGTCAAagctaaatatacataaaagaaTTCATACCGGCGTAAAACCATTTCGTTGTAATTTATGTCAAAAAACTTTTGCTCATTCTTCAAATTTATCAGACCATAAGAAAACTCACACTCAAGAAAGACCATATAAATGTGATATTTGCCACAAGTTGTTCACGTTGGCTAACAGTTTAcggaaacataaaatattacactccGGATACAAACCATATGTATGTGAAGTCTGTCAAAAAGCATTTGCCAAAAAAGCTAGTTTAGATCGTCACAAGGGTACACATGACGGTGTACCGCAATGGAAAAAACCATTTACAAACGGCGTTAAAGAAAAGCGGATGAATAATACTGATAAACCTTTTAAGTgtcatatttgttttaagtcGTTTGCTAGTGTAAATGGAATGACTAGACATACAGCCAAACATAATGGACAGAATCAATTTCAATGTGAAATTTGTAACAAGACTTTCACAGGTTTGTCAGTACTAGCTAGACACAAGCGAATACACACGGGTGAAAAACCATTTCAATGTGACTATTGTCCAAAAGCTTTCGCTTATTCATCAATACTAGTATCCCACCGACGCACTCATACCGGAGAAAAACCTTACCAGTGTGATCTTTGTCCCAAAGCATACACTCAATCATCTAGCTTAATAGTTCACAAGCGAACACATTGGAACAATCATCATCAGCCTATCAATTCTTCAATCGAACATCCGACGACTGAACCACTAGCTCAACCGAACACAACAAATCATTACGAATTACCAAACACGTCTGAGGCAGATGACTACGCCGACAATTGGTCGGGTTGGTATCCTAGCGAGCCTGATATATCTCTCGTCACGAACGAACTGCCCACCGAAGAGTCACCCGTACAAAACACGGTGGCCCACTTTCCCGCTCAAACCGTGTCCACCGGCCAAAATGAGAAGATAGACGTAAACATGTTTCCCCAAAAGTTCAAGTGTGCCAAGTGCAAAGAAGCTTACGACGAGAGCTTTCAGCTGTTGAAACACATCAGGGAAGTGCACAGGTCTAGCGCGGTCAGAGCGAAAAAGACGTCCGCGTTGAAAAGCAACGTCGCAGTGAAGCAGAAAAAGAAACGCGGCGAACGTCAGCGATTGGAATGCGACATTTGCCAGCGGCCGTTCAACGACTCGTACAAACTGAAGGTGCACCGGAGAACGCACACCCGGGAAAAGCCGTTCAAATGCGACACTTGCGACAAGTCGTTCATCGACTCGTGCAACCTGAAGGAACACCAGAAGGTGCACACCGGCGAGAAGCTGTTCGAGTGCGACATATGCCAGAAGACGTTTCTGCAGCTGGGCACGTTGACGACGCACCGGCGCACGCACACCGGCGAGAAACCGTACACGTGCGACGTGTGCCACATGACTTTCGCGTTGCTGAGCAGCATGAAAACGCACAAGCGGCGGGCACACACCGGCGAGAAACCGCACAAGTGCGACTTCTGTCAGAAGGCGTTCGTCAAGCGCAACGACATGGTCCGTCACCGGCGGACGCACACGGGCGAACGGCCGTTCGTGTGCGACATTTGCTGTCAGTCGTTCACCCAATCGTACGTGCTGGTGCTGCACAAGAGAAACCATCATTCGGCGGGCGACGGGGCCGCGGCGAACAACAAGCGTCCGGCTCCGCGGGACAAACCGTTCAAGTGCGACGTTTGCCACAAGTCGTTCGCCAGCCAGTCGACGTTGAACACGCACAACCGAACGCACACGGGCGAAAAACCGTACACCTGCGACGAGTGCGGCAAATCGTTCACGCAATCGTCGGGCCTCTTGGCCCACAAGGCCGCACACCACCCGTTGGACAAGACGTTCGGACACGCGCCGTACGCGTCCGCGGGCGCCGACGCGAGCAGACCTCCTCAGTACGTCGTGGCTCCGGACGTCCACAGGATACCTCAATATGCGGGCGACAGGACGTGCGAGTGCGCCGTGTGCCAGTCGTCGTTTGACCAGCCCGTTATCGCCGCTAACGAGCATTTCGGCCAGCCCGTCATAGCCGCCGCGATGTCCGACAGCAACGTGTATTACGGTTAA
Protein Sequence
MTEHIAKTLMVENEPYQNSIKSRHIEIETIPVEYICYKCNAVFYKRIQIEKHLKLFCCEEKCLDTDKLVPIIKKLPGLSKNESCFQYKHHQCELCSKSFTNKTKLIQHIQTHSGVKPFRCETCYRGFSNSYSLKSHEKTHTGIKPYRCDVCQKAFSHSHILINHKRTHSGEKPFKCKFCQKCFATSGTLVAHTRTHTGEQPYKCDICQKMFSLSSSLNAHKRTHTGDKPHKCIFCSKAFVKSGDLERHLRTHTGVKPFHCDLCDKSFTQSSGLIIHKRNHTGERPFACDSCERSFTNSASLIAHKRTHTGEIPHMPLHVLNVQQISNTQNSMQKNIFSEIPTSSTTGLWDTNVQTPSVGDFSYSWSNWFQSETDPNNTKDPIQSTNELSVPFMQPVYNGRENMGSMNTINSVSISLDNNVVPIKRPEGRWLDCDVCHKTFPYSSRHKLIEHQRTHTREKPFKCFICQKSFSLSSTLIVHKRMHTGERPFKCDLCPKAFAQKSKLNIHKRIHTGVKPFRCNLCQKTFAHSSNLSDHKKTHTQERPYKCDICHKLFTLANSLRKHKILHSGYKPYVCEVCQKAFAKKASLDRHKGTHDGVPQWKKPFTNGVKEKRMNNTDKPFKCHICFKSFASVNGMTRHTAKHNGQNQFQCEICNKTFTGLSVLARHKRIHTGEKPFQCDYCPKAFAYSSILVSHRRTHTGEKPYQCDLCPKAYTQSSSLIVHKRTHWNNHHQPINSSIEHPTTEPLAQPNTTNHYELPNTSEADDYADNWSGWYPSEPDISLVTNELPTEESPVQNTVAHFPAQTVSTGQNEKIDVNMFPQKFKCAKCKEAYDESFQLLKHIREVHRSSAVRAKKTSALKSNVAVKQKKKRGERQRLECDICQRPFNDSYKLKVHRRTHTREKPFKCDTCDKSFIDSCNLKEHQKVHTGEKLFECDICQKTFLQLGTLTTHRRTHTGEKPYTCDVCHMTFALLSSMKTHKRRAHTGEKPHKCDFCQKAFVKRNDMVRHRRTHTGERPFVCDICCQSFTQSYVLVLHKRNHHSAGDGAAANNKRPAPRDKPFKCDVCHKSFASQSTLNTHNRTHTGEKPYTCDECGKSFTQSSGLLAHKAAHHPLDKTFGHAPYASAGADASRPPQYVVAPDVHRIPQYAGDRTCECAVCQSSFDQPVIAANEHFGQPVIAAAMSDSNVYYG

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00135580;
90% Identity
iTF_00135580;
80% Identity
-