Dnox010824.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Diuraphis noxia
Gene Symbol
-
Assembly
GCA_001186385.1
Location
NW:1650833-1657262[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 28 0.13 9 6.5 1.3 1 21 40 60 40 61 0.95
2 28 3.8e-06 0.00026 20.8 3.5 1 23 96 118 96 118 0.98
3 28 8.8e-05 0.0061 16.4 3.1 1 23 124 146 124 146 0.99
4 28 0.00049 0.034 14.1 6.7 1 23 152 174 152 174 0.99
5 28 3.6e-07 2.5e-05 24.0 0.4 1 23 180 202 180 202 0.99
6 28 1.9e-06 0.00013 21.7 2.3 1 23 208 230 208 230 0.99
7 28 0.00021 0.015 15.2 2.0 1 23 236 258 236 258 0.95
8 28 1.9e-06 0.00013 21.7 2.7 1 23 264 286 264 286 0.98
9 28 2.2e-06 0.00015 21.5 0.4 1 23 292 314 292 314 0.97
10 28 2.5 1.7e+02 2.4 6.7 3 23 439 461 437 461 0.79
11 28 5.6e-06 0.00038 20.2 1.8 1 23 467 489 467 489 0.99
12 28 5e-07 3.4e-05 23.5 0.5 1 23 495 517 495 517 0.99
13 28 2.7e-05 0.0019 18.0 4.9 1 23 523 545 523 545 0.98
14 28 4.9e-05 0.0034 17.3 1.4 1 23 551 573 551 573 0.97
15 28 5.6e-06 0.00039 20.2 0.3 1 23 579 601 579 601 0.97
16 28 0.00058 0.04 13.9 2.7 1 23 627 649 627 649 0.98
17 28 1.6e-05 0.0011 18.8 0.3 1 23 655 677 655 677 0.98
18 28 6.8e-05 0.0047 16.8 2.4 1 23 683 705 683 705 0.99
19 28 1.5e-07 1e-05 25.2 0.4 1 23 711 733 711 733 0.99
20 28 0.0003 0.021 14.8 0.2 1 23 830 853 830 853 0.97
21 28 3.8e-06 0.00026 20.8 0.7 2 23 885 906 884 906 0.97
22 28 1.5e-06 0.0001 22.1 3.2 1 23 912 934 912 934 0.99
23 28 5.8e-05 0.004 17.0 1.2 1 23 940 962 940 962 0.98
24 28 0.001 0.07 13.1 2.0 1 23 968 991 968 991 0.98
25 28 0.00023 0.016 15.1 4.1 1 23 997 1019 997 1019 0.98
26 28 0.00035 0.024 14.5 3.8 1 23 1025 1047 1025 1048 0.95
27 28 1.2e-05 0.00086 19.1 2.9 1 23 1074 1096 1074 1096 0.98
28 28 2.3e-06 0.00016 21.4 1.3 1 23 1102 1124 1102 1125 0.94

Sequence Information

Coding Sequence
ATGACAGAACACCTTGCAAAAACATCAGTGATTCAAAATGAATCGTTTCAAAATCCAATTGAGTCCAGGCATATTGAAATGGATAAAATTGAAGTGGAAACTATCTTTCCAGtagaatatatatgttataaatgtaaGGCAGTATACTACAAACGTACACACATAgaaagacatttaaaattatcttgttGCTCAGAGAAATGTATAGTTACTGATAAAGTAGTTCCTATTATTAAGAAATTACCCGGTTTGTCAAAAAAtgaatcttattttaaatataaacatcacCAGTGTGAACTGTGTTCAAAATCTTTTACAAACAAGACAAAATTAATCCAACATATACAGACACATAGTGGGGTAAAACCATTTCGTTGTGAAACTTGCTATAGaggtttttctaatttttacagCTTGAAAAATCATGTAAAAACTCATACTGGCATAAAACCTTATAGATGTGACATTTGTCATAAAGCTTTTTCTcattcacatattttaataaatcataaaagaaCTCATACCGGAGAGAAACCATTTAAATGTGAGTTTTGTCAAAAAGTTTTTGCAACATCTGGAACGTTAGTGGCACACATACGTACACATACAGGTGAACAGCCATATAAATGTGATGTAtgtcaaaaaatgtttaccCTATCAAGCAGTTTAAATTCACACAAGAGAACGCATACAGGTGAAAAACctcataaatgtattttttgttcaaaagcATTTGTGAAGAGTGGTGACTTAGAGCGGCATTTGCGAACTCATACAGGTGTAAAACCGTTTCATTGCGATATGTGTGATAAATCTTTTACACAGTCSTCTGGGTTGATCATACACAAAAGAAAACACACAGGTGAAAGACCATTTGCATGTGATACGTGCGAACGATCGTTTACTAACTCGGCTAGTTTAATTGCACATAAGCGAACTCATACAGGAGAAATACCTCATATGCCTCTACATGTCCTAAATGCACAACAGATTTCAAATACTCAAAACACCatgcagaaaaatattttttcagaaataccTACAACGTCTACGACAGGTTTATGGGAGACAAGTGTTCCAACACCTTCAGTTGGAGATTTTAGTTACAGTTGGTCAAATTGGTTTCAAAGTGAAAYGGATCCTAATAGCACTAAAGATCCAATTCAAAGTAATAATGAACTTACAGTACCATTTATTCAGCCTGTGTTTAATGGAAGAGAAAATATTGgtattatgaatacaataaacAGTGTAAGTATTTCATCGGACAATAATGTTGTTCCTATCAAAAGACCCGAAGGTCGGTGGTTAGACTGTGATGTATGTCATAAGACTTTTCCTTATTCATCTAGGCATAAGCTGATTGAACACAAACGTACACATACACGtgaaaaaccatttaaatgCTATATATGTCAAAAATCATTTTCGTTGTCTAGTACCTTGATCGTGCATAAAAGAATGCATACTGGAGAAAGGCCATTCAAATGCGACGTATGCCCAAAAGCATTTGCTCAAAAATCTAAGCTAAACATACACAAAAGGATTCATACCGGTGTTAAACCATTTCATTGTGATTTATGTCAAAAAACGTTTGCTCATTCGTCTAATCTAGCAGACCATAAGAAAACTCACACTCAAGAAAGGCCATATAAATGTGATATTTGCTATAAATCGTTCACTCTAGCAAACAGTTTAcggaaacataaaatattacacacagGTTACAAACCATATGTATGTGAAATATGCCAAAAAGCGTTTGCCAAAAAAGGTAGTTTGGAACGTCACAAGGGTACACACGCTGGTGTACCGCAATGGACTAAACCATTTACAAATGGTGCAAAAGAAAAGCTAATGAATAACACMGATAAGCCTTTTAAATGCCATATTTGTTTCAAATCGTTCGCTAGTATAAACGGAATGACTAGACATACGGCTAAACATAATGGAGAAAATCAGTTTCAGTGTGAAATTTGTAACAAGATTTTTACAGGTTTATCTGTACTAGCTAGACACAAACGAATACATACGGGAGAAAAACCATTTCAGTGCGACTATTGCCACAAGGCGTTTGCTTATTCATCAATACTAGTATCTCACCGACGCACTCACACCGGGGAGAAACCTTACCAGTGTGATATTTGTCCCAAAGCGTACACTCAATCCTCTAGTTTAATAGTTCATAAGCGAACCCATTGGAACCACCATCAACAACCAATTAACTCGATCGAACATCCAACAACTGTACCACTAGCTCAACCAAGGACAACAAATCATTACGGATTGCCAAATGCATCTGAGGCAGACGACTACACTGACAATTGGTCGAGCTGGTATCCTAGCGAGCCTGATATACCTCTTGTCACRAATGAACTGCCTACCGAAGAGTCATCCATACCAAACACTGTGTGTGCCCACTTACCAGTACAAACCGCACTCAACGGCCTAAATGAGAAAATAGACGTTATCATGTTGCCGCAGAAGTTCAAGTGTGCCAAGTGTAAAGAAGCTTATGACGAAAGTTCTATGTTATTGAAACACATCAGGGAAGTGCACAGACTTGGCACAGTCAAAGTGAAAAATACGTCMTCTGTAAAAGTCRACGACGTGGTCAAGCAGAAAAAGAAACGTGGCGAACGTCAACAATTGGAATGCGACATTTGCCAGCGGCCGTTCAATGACTCGTACAAACTAAAAGTGCACCGGCGCACACACACCCGGGAGAAGCCGTTCAAATGCGACACGTGTGACAAGTCGTTCATCGACTCTTGCAACCTGAAGGAACATCAAAAGGTGCACACCGGTGAGAAGCTGTTCGAATGCGATATATGCCAGAAAACTTTTTTGCAGCTGGGCACGTTGACCACGCACCGGCGCACGCACACCGGCGAGAAACCGTACAGCTGTGACGTGTGCCACATGACTTTCGCGTTGCTGAGCAGCATGAAGACGCACAAGCGGCGCGCACACACCGGCGAGAAGCCGCACAAGTGCGATTTCTGCCAGAAGGCATTCGTCAAGCGCAACGACATGGTTCGGCACCGGAGAACGCACACGGGCGAACGGCCGTTCGTGTGCGACATTTGCCATCAGTCGTTCACCCAGTCGTACGTGCTGGTACTGCACAAGAGAAACCACCATTCGGGCGGCGGGACCGGCCAAGTCGCGCCGACGACAACGAACAAGCGACCAGCCGCACCGCCCAGAGACAAACCGTTCATGTGCGGAGTGTGCCATAAGTCCTTCGGCAGCCAGTCGACGTTGAACACGCACAACCGGACGCATACGGGCGAAAAACCGTTCCACTGCGACGAGTGTGGCAAGTCGTTTACGCAGTCGTCCGGTCTAGTCGCCCATCGGGCCGCCCACCACGCAGCGAACATGCCACTGTTCATAGACGCGAACGCGCTCGACACCAGCCAAAATAGACTTCAGTTCGCCGCGGCCACGGACGTACACAGAATACCTCAGTACGCCGGTGACAGGCCGTGCGAGTGTGCYGTGTGCCAGTCCTCGTTTGGCCACCCTTTTCCCGCCCTGAACCAGCACTTTGACCATCCCGTCGCAGTCGCTGTAGTGATGTCCAACAGCAACATGTATTACGGTTAA
Protein Sequence
MTEHLAKTSVIQNESFQNPIESRHIEMDKIEVETIFPVEYICYKCKAVYYKRTHIERHLKLSCCSEKCIVTDKVVPIIKKLPGLSKNESYFKYKHHQCELCSKSFTNKTKLIQHIQTHSGVKPFRCETCYRGFSNFYSLKNHVKTHTGIKPYRCDICHKAFSHSHILINHKRTHTGEKPFKCEFCQKVFATSGTLVAHIRTHTGEQPYKCDVCQKMFTLSSSLNSHKRTHTGEKPHKCIFCSKAFVKSGDLERHLRTHTGVKPFHCDMCDKSFTQSSGLIIHKRKHTGERPFACDTCERSFTNSASLIAHKRTHTGEIPHMPLHVLNAQQISNTQNTMQKNIFSEIPTTSTTGLWETSVPTPSVGDFSYSWSNWFQSEXDPNSTKDPIQSNNELTVPFIQPVFNGRENIGIMNTINSVSISSDNNVVPIKRPEGRWLDCDVCHKTFPYSSRHKLIEHKRTHTREKPFKCYICQKSFSLSSTLIVHKRMHTGERPFKCDVCPKAFAQKSKLNIHKRIHTGVKPFHCDLCQKTFAHSSNLADHKKTHTQERPYKCDICYKSFTLANSLRKHKILHTGYKPYVCEICQKAFAKKGSLERHKGTHAGVPQWTKPFTNGAKEKLMNNTDKPFKCHICFKSFASINGMTRHTAKHNGENQFQCEICNKIFTGLSVLARHKRIHTGEKPFQCDYCHKAFAYSSILVSHRRTHTGEKPYQCDICPKAYTQSSSLIVHKRTHWNHHQQPINSIEHPTTVPLAQPRTTNHYGLPNASEADDYTDNWSSWYPSEPDIPLVTNELPTEESSIPNTVCAHLPVQTALNGLNEKIDVIMLPQKFKCAKCKEAYDESSMLLKHIREVHRLGTVKVKNTSSVKVXDVVKQKKKRGERQQLECDICQRPFNDSYKLKVHRRTHTREKPFKCDTCDKSFIDSCNLKEHQKVHTGEKLFECDICQKTFLQLGTLTTHRRTHTGEKPYSCDVCHMTFALLSSMKTHKRRAHTGEKPHKCDFCQKAFVKRNDMVRHRRTHTGERPFVCDICHQSFTQSYVLVLHKRNHHSGGGTGQVAPTTTNKRPAAPPRDKPFMCGVCHKSFGSQSTLNTHNRTHTGEKPFHCDECGKSFTQSSGLVAHRAAHHAANMPLFIDANALDTSQNRLQFAAATDVHRIPQYAGDRPCECAVCQSSFGHPFPALNQHFDHPVAVAVVMSNSNMYYG

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00135580;
90% Identity
iTF_01032342;
80% Identity
-