Rnym018638.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Rhopalosiphum nymphaeae
Gene Symbol
-
Assembly
GCA_036289425.1
Location
JAZAQC010000026.1:5936006-5939599[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 28 0.015 1.8 9.7 2.0 1 21 40 60 40 61 0.95
2 28 6.8e-06 0.00081 20.2 3.3 1 23 96 118 96 118 0.98
3 28 4.6e-05 0.0056 17.6 2.7 1 23 124 146 124 146 0.98
4 28 0.00024 0.029 15.3 4.5 1 23 152 174 152 174 0.99
5 28 4.7e-06 0.00057 20.7 2.9 1 23 180 202 180 202 0.99
6 28 4.7e-07 5.6e-05 23.8 1.5 1 23 208 230 208 230 0.99
7 28 0.00025 0.03 15.3 2.0 1 23 236 258 236 258 0.95
8 28 4.8e-06 0.00058 20.6 2.1 1 23 264 286 264 286 0.97
9 28 7.4e-07 8.9e-05 23.2 0.5 1 23 292 314 292 314 0.97
10 28 0.68 81 4.5 6.4 3 23 439 461 437 461 0.82
11 28 6.6e-06 0.00079 20.2 1.8 1 23 467 489 467 489 0.99
12 28 1e-06 0.00012 22.8 0.7 1 23 495 517 495 517 0.99
13 28 3.3e-05 0.0039 18.0 6.0 1 23 523 545 523 545 0.98
14 28 0.00047 0.057 14.4 2.5 1 23 551 573 551 573 0.97
15 28 7.2e-05 0.0086 17.0 0.2 1 23 579 601 579 601 0.97
16 28 0.00063 0.076 14.0 2.7 1 23 627 649 627 649 0.98
17 28 7.8e-06 0.00094 20.0 0.6 1 23 655 677 655 677 0.98
18 28 3e-05 0.0036 18.2 0.5 1 23 683 705 683 705 0.99
19 28 5.3e-07 6.4e-05 23.7 0.5 1 23 711 733 711 733 0.99
20 28 0.002 0.24 12.4 0.3 1 23 828 851 828 851 0.97
21 28 4.4e-06 0.00053 20.8 0.7 2 23 883 904 882 904 0.97
22 28 1.7e-06 0.00021 22.1 3.2 1 23 910 932 910 932 0.99
23 28 6.8e-05 0.0082 17.0 1.2 1 23 938 960 938 960 0.98
24 28 0.0011 0.13 13.3 1.4 1 23 966 989 966 989 0.98
25 28 0.00028 0.033 15.1 4.1 1 23 995 1017 995 1017 0.98
26 28 0.079 9.5 7.4 4.2 1 23 1023 1045 1023 1046 0.95
27 28 2.2e-05 0.0027 18.6 3.2 1 23 1068 1090 1068 1090 0.98
28 28 1.3e-05 0.0016 19.3 2.8 1 23 1096 1118 1096 1119 0.95

Sequence Information

Coding Sequence
ATGACAGAACATTTTGCAAAAACATCAGTGGTTGAAAATGAATCAtatcaaaattcaattaaGTCCAGACATATTGAAATGGATAAAGCTgaagtaaaaactaattttccagtagaatatatatgttataaatgtaatactgTATTCTACAAACGAACACACATAGAGAAACAtcttaaattatctttttgtGATGGGAAATGTTTAGATACTGATAAAGTAGTTCCTATTATCAAGAAATTACCAGGTTTATCAGAAAATGAATCTCATTTTCAATACAAACATCACCAATGTGAACTCTGTTCAAAATCTTTTACAAACAGGactaaattaattcaacataTTCAGACACATAGTGGGGTAAAACCATTTCGTTGTGAAACTTGCTATAGAGGTTTTTCTAATTCTTACAGTTTGAAAAGTCATGAAAAAACTCATACTGGCATAAAACCTTATAGATGTGATATTTGTCAAAAAGCCTTTTCTCattcacatattttaataaatcataaaagaaCTCATTCCGGAGAGAAACCATTTAAATgtgaattttgtcaaaaatgttttgCTACATCTGGAACACTAGTGGCACACACACGTACACATACTGGCGAACAGCCATATAAATGTGATATATGTCAAAAAATGTTCTCCTTATCAAGCAGTTTAAATGCACATAAAAGAACACATACAGGTGATAAACCtcacaaatgtattttttgttcaaaagCATTTGTAAAGAGTGGTGACTTGGAGCGGCATTTGCGAACCCATACAGGTGTAAAACCGTTTCATTGCGATTTATGTGATAAATCTTTTACACAGTCGTCTGGCTTGATCATTCATAAAAGAAACCACACTGGCGAAAGACCATTTGCATGTGATACATGCGACCGGTCGTTTACCAATTCAGCTAGTTTAATAGCACACAAGCGAACTCACACAGGAGAAATACCTCATATGCCCCTACATGTCCTAAATGTACAACAAATTTCTAATACTCAAAACACTAtgcagaaaaatattttttcagaaataCCTACAACTGTTACAACAGGTTTATGGGACACTAGTGTTCCAACACCAACAGTTGGAGATTTTAGTTACAGTTGGTCAAATTGGTTTCAAAGTGAAACGGATCCTAATAACACTAAAGATCCAATTCAAAGTACCAATGAACTTTCGGTACCATTTATGCAGCCTGTGTATAATGGAAGAGAAAACATTAGTAGTATGAATACAATAAACAGTGTAAGTATTTCATTGGATAATGATGTTGTACCCATCAAAAGACCCGAAGGCCGGTGGTTAGATTGTGATGTATGCCATAAGACTTTTCCTTATTCGTCTagacataaattaattgaacacCAACGAACACATACTCGTGAAAAACCATTTAAATGCTATATatgtcaaaaatcattttctttATCTAGTACCTTGATTGTACATAAAAGAATGCATACGGGAGAAAGGCCATTCAAATGTGATTTATGTCCAAAAGCATTTGCCCAAAAATCAAAGctcaatatacataaaaggATTCACACTGGTGTAAAACCATTTCATTGTAATGTATGTCAAAAAACATTTGCTCATTCTTCAAATTTGTCAGACCATAAGAAAACCCACACCCAAGAAAGACCATATAAATGCGATATTTGCCACAAGTTGTTCACGTTGGCCAACAGTTTAcggaaacataaaatattacactccGGTTACAAACCATATGTCTGTGAAGTCTGCCAAAAAGCATTTGCCAAAAAAGCTAGTTTAGATCGTCACAAGGGTACACATGATGGTGTACCGGAATGGACAAAACCATTTACAAACGGCATTAAAGAAAAGCGAATGAATAACACTGATAAGCCTTTTAAATgtcatatttgttttaagtcATTTGCTAGTGTAAATGGAATGACTAGACATACAGCCAAACATAATGGACAAGATCAATTTCGATGTGAAATTTGTAACAAGACATTCACGGGTTTGTCAGTACTAGCCAGACACAAACGAATACACACAGGAGAAAAACCATTTCAGTGTGACTACTGTCCTAAGGCTTTCGCTTATTCATCAATACTAGTATCTCACCGACGCACTCATACTGGAGAAAAACCTTACCAGTGTGATCTTTGTCCCAAAGCGTACACTCAATCCTCTAGTTTAATAGTTCATAAGCGAACACATTGGAACAATCATCAGCCAATTAACTCAATCGAACATCCAACGACTGAACCACTAGCTCAACCAGGGACAACAAATCAATACGAATTACCAAATACATCGGAGGCCGATGACTACACTGACAATTGGTCGGGCTGGTATCCTAGCGAGCCTGATATATCTCTTGTCACAAATGAACTAGCAACTGAAGAGCCACCTATACAAAACACAGTAGCTCACTTTCCCGCACAAACCGTAACCATTAcccaaaatgaaaaaatagacATAAACATGTTGCCGCAAAAGTTTAAGTGCGCCAAGTGTAAAGAAGCTTATGACGAGagttttttgttattgaaaCACATTAGAGAAGTGCACAGGTCTAATGCAGTCAAAGAGAAAAAGACGTCCGCGTTAAAAAACAATGACGTGGTCAagcagaaaaaaaaacgaggCGAACGTCAACGATTGGAATGCGATATTTGCCAACGGCCGTTCAACGACTCGTACAAACTGAAAGTGCACCGGAGAACACACACTCGGGAGAAGCCGTTCAAATGTGACACCTGTGATAAGTCGTTCATTGATTCGTGCAACCTCAAGGAACACCAGAAGGTACACACTGGTGAAAAGCTATTCGAGTGCGACATATGTCAGAAGACGTTTTTGCAGCTGGGCACGTTAACAACGCACCGACGCACGCACACTGGCGAAAAGCCGTATACTTGTGACGTGTGCCACATGGCTTTCGCGTTGCTCAGTAGCATGAAAACGCACAAGCGGCGCGCACACACCGGCGAAAAGCCGCATAAGTGTGATTTCTGCCAGAAAGCGTTCGTCAAGCGCAACGACATGGTCCGTCACCGGAGGACGCACACGGGCGAACGGCCGTTCGTATGCGACATTTGCTGTCAGTCGTTCACCCAATCGTACGTGCTGGTGCTGCACAAAAGAAACCATCATTCGGGCGACGGGGCCGGAGCTGCGGCGAACAAGCGCCCGGTCGCGCCACCCCGAGACAAACCGTTCAAGTGCGGCGCTTGCCACAAATCGTTCGCCAGCCAATCGACGTTGAACACGCACAACCGAACGCACACGGGCGAGAAACCATACCATTGCGACGAGTGCAGTAAATCGTTCACGCAGTCGTCCGGTCTCGTAGCCCATAAGGCCACACACCACGCGGCGGATAAGTCGTTCGGACACGCGTACGCGCCCGGCAACAGCAGAAGCAGACCTCAGTACGCCGCGACTCCGGATGTCCACCTCCACAGGATACCTCAGTACGCGGGCGACAGGCCGTGCGAGTGTGCCGTGTGCCAGTCATCGTTTGGCCAGCCCGTTACCGTCATGAACGAGCACTTTAATCAACCCGTCACCGCCACTGTGATGTCTGACAGCAACTTGTATTACGGTTAG
Protein Sequence
MTEHFAKTSVVENESYQNSIKSRHIEMDKAEVKTNFPVEYICYKCNTVFYKRTHIEKHLKLSFCDGKCLDTDKVVPIIKKLPGLSENESHFQYKHHQCELCSKSFTNRTKLIQHIQTHSGVKPFRCETCYRGFSNSYSLKSHEKTHTGIKPYRCDICQKAFSHSHILINHKRTHSGEKPFKCEFCQKCFATSGTLVAHTRTHTGEQPYKCDICQKMFSLSSSLNAHKRTHTGDKPHKCIFCSKAFVKSGDLERHLRTHTGVKPFHCDLCDKSFTQSSGLIIHKRNHTGERPFACDTCDRSFTNSASLIAHKRTHTGEIPHMPLHVLNVQQISNTQNTMQKNIFSEIPTTVTTGLWDTSVPTPTVGDFSYSWSNWFQSETDPNNTKDPIQSTNELSVPFMQPVYNGRENISSMNTINSVSISLDNDVVPIKRPEGRWLDCDVCHKTFPYSSRHKLIEHQRTHTREKPFKCYICQKSFSLSSTLIVHKRMHTGERPFKCDLCPKAFAQKSKLNIHKRIHTGVKPFHCNVCQKTFAHSSNLSDHKKTHTQERPYKCDICHKLFTLANSLRKHKILHSGYKPYVCEVCQKAFAKKASLDRHKGTHDGVPEWTKPFTNGIKEKRMNNTDKPFKCHICFKSFASVNGMTRHTAKHNGQDQFRCEICNKTFTGLSVLARHKRIHTGEKPFQCDYCPKAFAYSSILVSHRRTHTGEKPYQCDLCPKAYTQSSSLIVHKRTHWNNHQPINSIEHPTTEPLAQPGTTNQYELPNTSEADDYTDNWSGWYPSEPDISLVTNELATEEPPIQNTVAHFPAQTVTITQNEKIDINMLPQKFKCAKCKEAYDESFLLLKHIREVHRSNAVKEKKTSALKNNDVVKQKKKRGERQRLECDICQRPFNDSYKLKVHRRTHTREKPFKCDTCDKSFIDSCNLKEHQKVHTGEKLFECDICQKTFLQLGTLTTHRRTHTGEKPYTCDVCHMAFALLSSMKTHKRRAHTGEKPHKCDFCQKAFVKRNDMVRHRRTHTGERPFVCDICCQSFTQSYVLVLHKRNHHSGDGAGAAANKRPVAPPRDKPFKCGACHKSFASQSTLNTHNRTHTGEKPYHCDECSKSFTQSSGLVAHKATHHAADKSFGHAYAPGNSRSRPQYAATPDVHLHRIPQYAGDRPCECAVCQSSFGQPVTVMNEHFNQPVTATVMSDSNLYYG

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00135580;
90% Identity
iTF_00135580;
80% Identity
-