Agos004495.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Aphis gossypii
Gene Symbol
-
Assembly
GCA_004010815.1
Location
NW:302487-308653[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 28 0.057 4.3 7.5 0.3 1 21 39 59 39 60 0.95
2 28 3.5e-06 0.00026 20.8 3.5 1 23 95 117 95 117 0.98
3 28 3.7e-05 0.0028 17.6 2.7 1 23 123 145 123 145 0.98
4 28 0.00034 0.025 14.5 4.5 1 23 151 173 151 173 0.99
5 28 3.7e-06 0.00028 20.7 2.9 1 23 179 201 179 201 0.99
6 28 3.7e-07 2.8e-05 23.8 1.5 1 23 207 229 207 229 0.99
7 28 0.0002 0.015 15.3 2.0 1 23 235 257 235 257 0.95
8 28 3.8e-06 0.00029 20.6 2.1 1 23 263 285 263 285 0.97
9 28 2.1e-06 0.00015 21.5 0.4 1 23 291 313 291 313 0.97
10 28 0.53 40 4.5 6.4 3 23 438 460 436 460 0.82
11 28 5.6e-06 0.00042 20.1 1.9 1 23 466 488 466 488 0.99
12 28 8.1e-07 6.1e-05 22.8 0.7 1 23 494 516 494 516 0.99
13 28 5.5e-06 0.00041 20.2 4.6 1 23 522 544 522 544 0.99
14 28 0.00037 0.028 14.4 2.5 1 23 550 572 550 572 0.97
15 28 5.6e-05 0.0042 17.0 0.2 1 23 578 600 578 600 0.97
16 28 0.0005 0.037 14.0 2.7 1 23 626 648 626 648 0.98
17 28 4.3e-06 0.00033 20.5 0.5 1 23 654 676 654 676 0.98
18 28 2.3e-05 0.0018 18.2 0.5 1 23 682 704 682 704 0.99
19 28 4.2e-07 3.1e-05 23.7 0.5 1 23 710 732 710 732 0.99
20 28 0.0007 0.053 13.5 0.4 1 23 829 852 829 852 0.97
21 28 3.5e-06 0.00026 20.8 0.7 2 23 884 905 883 905 0.97
22 28 1.3e-06 0.0001 22.1 3.2 1 23 911 933 911 933 0.99
23 28 5.4e-05 0.004 17.0 1.2 1 23 939 961 939 961 0.98
24 28 0.00055 0.042 13.8 2.5 1 23 967 990 967 990 0.98
25 28 0.00022 0.016 15.1 4.1 1 23 996 1018 996 1018 0.98
26 28 0.11 8.3 6.6 4.1 1 23 1024 1046 1024 1047 0.95
27 28 4e-05 0.003 17.4 5.8 1 23 1064 1086 1064 1086 0.96
28 28 2.2e-06 0.00016 21.4 0.1 1 23 1092 1114 1092 1115 0.94

Sequence Information

Coding Sequence
ATGACAGAACACATTGCAAAAATATCAGGGGTTGAAAATGAATCATATCAAAATTCAATGAAGTCTAGACATATTGAAATAGATAAAGCCGAAATAGAAACTATTCCAGtagaatatatatgttataaatgtaatgcTGTGTTCTACAAACGAATACAAATAGAGAAACATCTAAAATTATCCTGTTGTGAGGAGAAATGCTTAGATACTGATAAAGTAGTtcctattatcaaaaaattaccaggtttatcaaaaaatgaatcttattttcaatataaacatCATCAATGTGAACTGTGTTCAAAATCTTTTACAAACAagacaaaattaattcaacataTTCAGACACATAGTGGGGTGAAACCATTTCGTTGTGAAACTTGTTATAGAGGTTTTTCTAATTCTTATAGTTTGAAAAGTCATGAAAAAACTCATACTGGCATAAAACCCTATAGATGTGATGTTTGTCAAAAAGCCTTTTCTCattcacatattttaataaatcataaaagaaCTCATTCCGGAGAGAAACCATTTAAATgcgaattttgtcaaaaatgttttgctACATCTGGAACGTTAGTAGCACACACACGTACACATACAGGTGAACAGCCATATAAATGCGATATatgtcaaaaaatgttttccttATCAAGCAGTTTAAATGCTCATAAAAGAACACATACAGGAGACAAACCgcacaaatgtattttttgttcaaaagCATTTGTAAAGAGTGGTGACTTGGAACGGCATTTGCGAACCCATACAGGTGTAAAACCGTTTCATTGCGATTTGTGTGATAAATCTTTTACACAGTCATCTGGGTTGATTATTCATAAAAGAAACCACACTGGGGAAAGACCATTTGCATGTGATACATGCGAACGGTCATTTACTAATTCAGCTAGTTTAATAGCACACAAGCGAACTCATACAGGAGAAATACCTCATATGCCACTACATGTTCTAAATGTACAACAGATTTCCAATACTCAAAACAGTAtgcaaaaaaacattttttcagaaATACCTACATCATCTACAACAGGTTTATGGGACACTAATGTTCCAACACCATCAGTTGGAGATTTTAGTTACAGTTGGTCAAATTGGTTTCAAAGTGAAACGGATCCTAATAACACTAAAGATCCCATTCAAAGTACTAATGAACTTACGGTACCATTTATGCAGCCTGTGTATAATGGAAGAGAAAACATGGGTAGtatgaatacaataaacaGTGTAAGTATTTCATTGGACAATCATGTTGTACCTATCAAAAGACCTGAAGGTCGGTGGTTAGATTGTGATGTATGCCATAAGACTTTTCCTTATTCTTCCAGACATAAATTGATTGAACACCAACGGACACATACTCGtgaaaaaccatttaaatgcTTTATATGTCAAAAATCATTTTCGTTGTCTAGTACCTTGATTGTACATAAAAGAATGCATACAGGAGAAAGACCATTCAAATGTGATTTATGTCCAAAAGCATTTGCGCAAAAATCAAagctaaatatacataaaaggaTTCACACCGGTGTAAAACCATTTCGTTGTAATTTATGTCAAAAAACTTTTGCTCATTCTTCAAATTTGTCAGACCATAAGAAAACTCACACTCAAGAGAGACCGTATAAATGCGATATTTGCCACAAGTTGTTCACGTTGGCTAACAGCTTAcggaaacataaaatattacactccGGTTACAAACCATATGTATGTGAAGTCTGTCAAAAAGCGTTTGCCAAAAAAGCTAGTTTAGATCGTCACAAGGGTACACATGACGGTGTACCGCAATGGACAAAACCATTTACGAACGGCGTTAAAGAAAAGCGGATGAATAATACTGATAAACCTTTTAAGTgtcatatttgttttaagtcGTTTGCTAGTGTAAATGGAATGACTAGACATACAGCCAAACATAACGGACAGGATCAATTTCAATGTGAAATTTGTAACAAGACTTTCACAGGTTTGTCAGTACTAGCTAGACACAAGCGAATACACACGGGTGAAAAACCATTTCAATGTGACTATTGTCCAAAAGCTTTCGCTTATTCATCAATACTAGTATCCCACCGACGCACTCATACCGGAGAGAAACCTTACCAGTGTGATCTTTGTCCCAAAGCATACACTCAATCCTCTAGCTTAATAGTTCACAAGCGAACACATTGGAACGATCATCAGCCGACCAATTCAATCGAACATCCGACGACTGAACCACTAGCTCAACCGAGCACAACAAATCATTACGAATTACCAAACACGTCTGAGGCAGATGACTACACCGACAATTGGTCGGGTTGGTATCCTAGCGAGCCCGACATATCTCTCGTCACGAACGAACTGCCCACCGAAGAGTCGCCCGTACAAAACACGGTGGCCCAGTTTCCCGCTCAAACCGTGCAGTCCACCGGCCAAAACGAGAAAATAATAGACGTTAACATGTTTCCCCAAAAGTTCAAGTGTGCCAAGTGCAAAGAGGCTTACGACGAGAGCTTTCAGCTGTTGAAACACATCAGGGAAGTGCACAGGTCTAGCGCGGTCAGAGCGCAAAAGACGTCCGCGTCGAAAAGCGACGACGCGGTCAAGCAGAAAAAGAAACGCGGCGAACGTCAACGGTTGGAGTGCGACATCTGCCAGCGGCCGTTCAACGACTCGTACAAACTGAAGGTGCACCGGAGAACGCACACCCGGGAAAAGCCGTTCAAATGCGACACTTGCGACAAGTCGTTCATCGACTCGTGCAACCTGAAGGAACACCAGAAAGTGCACACCGGCGAGAAGCTGTTCGAGTGCGACATTTGCCAGAAGACGTTTCTGCAGCTGGGCACGTTGACGACGCACCGGCGCACGCACACCGGCGAGAAGCCGTACACGTGCGACGTGTGCCACACGACATTCGCGTTGCTGAGCAGCATGAAAACGCACAAGCGGCGGGCGCACACCGGCGAGAAACCGCACAAGTGCGACTTCTGTCAGAAGGCGTTCGTCAAGCGCAACGACATGGTCCGTCACCGGCGGACGCACACGGGCGAACGGCCGTTCGTGTGCGACGTTTGCTGTCAGTCGTTCACCCAATCGTACGTGCTGGTGCTGCACAAGAGAAACCATCATTCGGCGGCCGACGACAAGCGTCCGGCTCCGGCGCCGCGGGACAAACCGTTCAGGTGCCACGTGTGCCACAAGTCGTTCGCCAGCCAGTCGACGTTGAACACGCACGACCGAACGCACACGGGCGAAAAACCGTACGTCTGCGACGAGTGCGGCAAATCGTTCGCGCAATCGTCGGGCCTCGTGGCCCACAAGGCCGCACACCACCACCCCCCGTTGGACAAGACGTTCGGACACGCGCCGTACGCGTCCGCGGGCGCCGACGGGAGCGGACCTCCTCCTCAGTACGTCGTGCAGGCTCCGGACGTCCACAGGATACCTCAATACGCGGGCGACAGGACGTGCGAGTGCGCCGTGTGCCAGTCGTCGTTTGACCAGCCCGTTATCGCCGCTAACGAGCATTTCGGCCAACCCATCATCGCCGCCGCGATGTCCGACAGCAACGTGTATTACGGTTAG
Protein Sequence
MTEHIAKISGVENESYQNSMKSRHIEIDKAEIETIPVEYICYKCNAVFYKRIQIEKHLKLSCCEEKCLDTDKVVPIIKKLPGLSKNESYFQYKHHQCELCSKSFTNKTKLIQHIQTHSGVKPFRCETCYRGFSNSYSLKSHEKTHTGIKPYRCDVCQKAFSHSHILINHKRTHSGEKPFKCEFCQKCFATSGTLVAHTRTHTGEQPYKCDICQKMFSLSSSLNAHKRTHTGDKPHKCIFCSKAFVKSGDLERHLRTHTGVKPFHCDLCDKSFTQSSGLIIHKRNHTGERPFACDTCERSFTNSASLIAHKRTHTGEIPHMPLHVLNVQQISNTQNSMQKNIFSEIPTSSTTGLWDTNVPTPSVGDFSYSWSNWFQSETDPNNTKDPIQSTNELTVPFMQPVYNGRENMGSMNTINSVSISLDNHVVPIKRPEGRWLDCDVCHKTFPYSSRHKLIEHQRTHTREKPFKCFICQKSFSLSSTLIVHKRMHTGERPFKCDLCPKAFAQKSKLNIHKRIHTGVKPFRCNLCQKTFAHSSNLSDHKKTHTQERPYKCDICHKLFTLANSLRKHKILHSGYKPYVCEVCQKAFAKKASLDRHKGTHDGVPQWTKPFTNGVKEKRMNNTDKPFKCHICFKSFASVNGMTRHTAKHNGQDQFQCEICNKTFTGLSVLARHKRIHTGEKPFQCDYCPKAFAYSSILVSHRRTHTGEKPYQCDLCPKAYTQSSSLIVHKRTHWNDHQPTNSIEHPTTEPLAQPSTTNHYELPNTSEADDYTDNWSGWYPSEPDISLVTNELPTEESPVQNTVAQFPAQTVQSTGQNEKIIDVNMFPQKFKCAKCKEAYDESFQLLKHIREVHRSSAVRAQKTSASKSDDAVKQKKKRGERQRLECDICQRPFNDSYKLKVHRRTHTREKPFKCDTCDKSFIDSCNLKEHQKVHTGEKLFECDICQKTFLQLGTLTTHRRTHTGEKPYTCDVCHTTFALLSSMKTHKRRAHTGEKPHKCDFCQKAFVKRNDMVRHRRTHTGERPFVCDVCCQSFTQSYVLVLHKRNHHSAADDKRPAPAPRDKPFRCHVCHKSFASQSTLNTHDRTHTGEKPYVCDECGKSFAQSSGLVAHKAAHHHPPLDKTFGHAPYASAGADGSGPPPQYVVQAPDVHRIPQYAGDRTCECAVCQSSFDQPVIAANEHFGQPIIAAAMSDSNVYYG

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00135580;
90% Identity
iTF_00135580;
80% Identity
-