Sgrm024322.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Schizaphis graminum
Gene Symbol
-
Assembly
GCA_003264975.1
Location
QEWZ01001404.1:2399072-2402680[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 28 0.019 1.8 9.7 2.0 1 21 40 60 40 61 0.95
2 28 5.7e-06 0.00055 20.8 3.5 1 23 96 118 96 118 0.98
3 28 5.9e-05 0.0058 17.5 2.7 1 23 124 146 124 146 0.98
4 28 0.00031 0.03 15.3 4.5 1 23 152 174 152 174 0.99
5 28 9.8e-06 0.00095 20.0 2.7 1 23 180 202 180 202 0.99
6 28 1.1e-06 0.0001 23.0 1.4 1 23 208 230 208 230 0.99
7 28 0.00032 0.031 15.2 2.0 1 23 236 258 236 258 0.95
8 28 6.2e-06 0.0006 20.6 2.1 1 23 264 286 264 286 0.97
9 28 9.5e-07 9.2e-05 23.2 0.5 1 23 292 314 292 314 0.97
10 28 0.87 84 4.4 6.4 3 23 439 461 437 461 0.82
11 28 8.4e-06 0.00081 20.2 1.8 1 23 467 489 467 489 0.99
12 28 1.3e-06 0.00013 22.7 0.7 1 23 495 517 495 517 0.99
13 28 9e-05 0.0087 17.0 6.5 1 23 523 545 523 545 0.98
14 28 0.0006 0.059 14.4 2.5 1 23 551 573 551 573 0.97
15 28 9.2e-05 0.0089 17.0 0.2 1 23 579 601 579 601 0.97
16 28 0.00081 0.078 14.0 2.7 1 23 627 649 627 649 0.98
17 28 1e-05 0.00097 20.0 0.6 1 23 655 677 655 677 0.98
18 28 3.8e-05 0.0037 18.2 0.5 1 23 683 705 683 705 0.99
19 28 6.8e-07 6.6e-05 23.7 0.5 1 23 711 733 711 733 0.99
20 28 0.0029 0.28 12.2 0.4 1 23 829 852 829 852 0.97
21 28 6.1e-06 0.00059 20.7 0.6 2 23 884 905 883 905 0.97
22 28 2.2e-06 0.00021 22.1 3.2 1 23 911 933 911 933 0.99
23 28 8.7e-05 0.0084 17.0 1.2 1 23 939 961 939 961 0.98
24 28 0.0018 0.17 12.9 1.0 1 23 967 990 967 990 0.98
25 28 0.00035 0.034 15.1 4.1 1 23 996 1018 996 1018 0.98
26 28 0.18 17 6.6 4.1 1 23 1024 1046 1024 1047 0.95
27 28 2.8e-05 0.0028 18.6 3.2 1 23 1070 1092 1070 1092 0.98
28 28 9.3e-05 0.009 16.9 1.2 1 23 1098 1120 1098 1121 0.93

Sequence Information

Coding Sequence
ATGACAGAACACCTAGAAAAAACATCAACGGTGGAAAATGAATCTTatcaaaattcaattaattccAGACATATTGAAATGGATAAAACTGTAGTAGAAACTAATTTTCCAGtagaatatatatgttataaatgtaatactgTATTCTACAAACGAACACATATAGAGAAACacttaaaattatctttttgtGAGGGGAAATGTTTAGATACTGATAAAGCAGTTCCTATTATCAAGAAATTACCAGGTTTATCAAAAAATGAATCtcattttcaatataaacaTCATCAATGTGAACTTTGTTCAAAATCTTTTACAAACAAgacaaaattaattcaacatatTCAAACACATAGTGGGGTAAAACCATTTCGTTGTGAAACTTGCTATAGAGGTTTTTCTAATTCTTACAGTTTGAAAAGTCATGAAAAAACTCATACTGGCATAAAACCTTATAGATGTGATATTTGTCAAAAAGCCTTTTCTCATtcacacattttaataaatcataaaagaaCTCACTCCGGAGAGAAACCATTTAAATGTGaattttgtgaaaaatgttttgCTACATCTGGAACGTTAGTGGCACATAAACGTACACATACTGGTGAACAGCCATATAAATGTGATGTATGTCAAAAAATGTTCTCTTTATCAAGCAGTTTAAATGCTCACAAAAGAACACATACAGGTGACAAACCtcacaaatgtattttttgttcaAAAGCATTTGTAAAGAGTGGTGACTTAGAGCGGCATTTGCGAACTCATACAGGTGTAAAACCGTTTCATTGCGATTTGTGTGATAAATCTTTTACACAGTCGTCTGGCTTGATCATTCATAAAAGAAACCACACTGGCGAAAGACCATTTGCATGCGATACATGTGACCGATCATTTACCAATTCAGCTAGTTTAATAGCACATAAGCGAACTCATACAGGAGAAATACCTCATATGCCTCTACATGTCCTAAATGTTCAACAAATCTCTAATACTCAAAATACTatgcagaaaaatattttttcagaaatacCTACAACAGTTACAACAGGTTTATGGGACACTAGTGTTCCAACACCATCAGTTGGAGATTTTAGTTACAGTTGGTCAAACTGGTTTCACAGTGAAACGGAACCTAATAACACTAAAGATCCAATTCAAAGTACAAATGAACTTTCGGTACCATTTATGCAGCCTGTGTATAATGAGAGAGAAAACATTAgtaatatgaatacaataaacAGTGTAAGTATTTCATTGGAGAATAATGTTGTACCCATCAAAAGACCCGAAGGCCGGTGGTTAGATTGTGATGTATGCCATAAAACTTTTCCTTATTCATCCAGacataaattaattgaacacCAACGGACACATACCCGTGAAAAACCATTTAAATGCTATATATGTCAAAAATCATTTTCTTTATCTAGTACCTTGATTGTGCACAAAAGAATGCATACGGGAGAAAGGCCATTCAAATGTGATTTATGTCCGAAAGCATTTGCCCAAAAATCAAagctaaatatacataaaagaatTCACACTGGTGTAAAACCATTTCATTGTAATTTATGTCAAAAAACATTTGCCCATTCTTCAAATTTGTCAGACCATAAGAAAACCCACACCCAAGAAAGACCATATAAATGCGATATTTGCCACAAGTTGTTCACGCTAGCCAACAGTTTAcggaaacataaaatattacactcCGGTTACAAACCATATGTATGTGAAGTCTGCCAAAAAGCATTTGCCAAAAAAGCTAGTTTAGATCGTCACAAGGGTACACATGATGGTGTACCGCAATGGACAAAACCATTTACAAACGGCCTTAAAGAAAAGCGAATGAATAACATTGATAAACCTTTTAAATGTCATATTTGTTTTAAGTCGTTTGCCAGTGTAAATGGAATGACTAGACATACAGCCAAACATAATGGACAAGATCAATTTCGATGTGAAATTTGTAACAAGACTTTCACGGGTTTGTCAGTACTAGCCAGACACAAACGAATACACACAGGTGAAAAACCATTTCAGTGTGACTATTGTCCTAAGGCTTTCGCTTATTCATCAATACTAGTATCTCATCGACGCACTCATACTGGAGAAAAACCTTACCAGTGTGATCTTTGTCCCAAAGCGTACACTCAATCCTCTAGTTTAATAGTTCATAAGCGAACACACTGGAACAATCATCAGCCAATTAACTCAATCGAACATCCAACGACTGAACCACTAGCTCAACCTGCAGGGACAACAAATCAATACGAATTACCAAATACGTCGGAGGCCGATGACTACACTGACAATTGGTCGGGCTGGTATCCTAGCGAGCCTGATATATCTCTTGTCACAAATGAACTAGCCACCGAAGAGCCGCCTATACAAAACAGAGTAGCTCACTTTCCCGCTCAAACCGTAACCAACAACCAAAATGAGAAAATAGACATAAACATGTTACCGCAAAAGTTCAAGTGCGCCAAGTGCAAAGAAGCTTATGACGAGAGCTTTATGTTATTGAAACACATTAGAGAAGTGCACAGGTCTAGCGCAGTCAAAGTGAAAAGGACGTCTGCATTAAAAAGCAACGACGTGGTCAAGCAGAAAAAGAAACGTGGCGAACGTCAACGATTGGAATGCGATATTTGCCAACGGCCGTTCAACGACTCGTACAAACTGAGAGTGCACCGGAGAACACACACTCGGGAGAAGCCGTTCAAATGTGACACGTGTGACAAGTCGTTCATCGACTCGTGCAACCTCAAGGAACACCAAAAGGTGCACACCGGCGAGAAGCTGTTCGAGTGCGACATATGTCAGAAGACGTTTCTGCAGCTGGGCACGTTGACAACGCACCGACGCACGCACACTGGCGAAAAGCCGTACACCTGTGACGTGTGCCGCATGACTTTCGCGTTGCTCAGTAGCATGAAGACGCACAAGCGGCGCGCCCATACCGGCGAGAAGCCGCATAAGTGTGATTTCTGCCAGAAGGCGTTCGTCAAACGCAACGACATGGTCCGTCACCGGAGGACGCACACGGGCGAACGGCCGTTCGTGTGCGACGTTTGCTGTCAGTCGTTCACCCAATCGTACGTGCTGGTGCTGCACAAAAGAAACCATCATTCGGGCGACGGGGCCGGAGGGGCCGCGGCGAACAAGCGCCCGGTCGCGCCGCCCCGAGACAAACCGTTCAAGTGCGGCGCTTGCCACAAATCGTTCGCCAGCCAGTCGACGTTGAACACGCACAACCGAACGCACACGGGCGAGAAACCGTACCATTGCGACGAGTGCAGCAAATCGTTCGCGCAATCGTCGGGCCTCGTGGCCCATAAGGCCGCACACCACGCGGCGGACGAGTCGTTCGGACACGCGTACGCGCCCGGCACCGGCAATGGCGGACCTCAGTACGCCGCGGCTCCGGACGTCCACCTCCACAGGATACCTCAGTACGCGGGTGACAGGCCGTGCGAGTGTGCCGTGTGCCAGTCGTCGTTCGGCCAGCCCGTTACCGTCGTCATGAACGAGCACTTCAACCAACCCGTCGCCGCCGCCACTGCGATGTCTGACAGCAACAACTTGTATTACGGTTAG
Protein Sequence
MTEHLEKTSTVENESYQNSINSRHIEMDKTVVETNFPVEYICYKCNTVFYKRTHIEKHLKLSFCEGKCLDTDKAVPIIKKLPGLSKNESHFQYKHHQCELCSKSFTNKTKLIQHIQTHSGVKPFRCETCYRGFSNSYSLKSHEKTHTGIKPYRCDICQKAFSHSHILINHKRTHSGEKPFKCEFCEKCFATSGTLVAHKRTHTGEQPYKCDVCQKMFSLSSSLNAHKRTHTGDKPHKCIFCSKAFVKSGDLERHLRTHTGVKPFHCDLCDKSFTQSSGLIIHKRNHTGERPFACDTCDRSFTNSASLIAHKRTHTGEIPHMPLHVLNVQQISNTQNTMQKNIFSEIPTTVTTGLWDTSVPTPSVGDFSYSWSNWFHSETEPNNTKDPIQSTNELSVPFMQPVYNERENISNMNTINSVSISLENNVVPIKRPEGRWLDCDVCHKTFPYSSRHKLIEHQRTHTREKPFKCYICQKSFSLSSTLIVHKRMHTGERPFKCDLCPKAFAQKSKLNIHKRIHTGVKPFHCNLCQKTFAHSSNLSDHKKTHTQERPYKCDICHKLFTLANSLRKHKILHSGYKPYVCEVCQKAFAKKASLDRHKGTHDGVPQWTKPFTNGLKEKRMNNIDKPFKCHICFKSFASVNGMTRHTAKHNGQDQFRCEICNKTFTGLSVLARHKRIHTGEKPFQCDYCPKAFAYSSILVSHRRTHTGEKPYQCDLCPKAYTQSSSLIVHKRTHWNNHQPINSIEHPTTEPLAQPAGTTNQYELPNTSEADDYTDNWSGWYPSEPDISLVTNELATEEPPIQNRVAHFPAQTVTNNQNEKIDINMLPQKFKCAKCKEAYDESFMLLKHIREVHRSSAVKVKRTSALKSNDVVKQKKKRGERQRLECDICQRPFNDSYKLRVHRRTHTREKPFKCDTCDKSFIDSCNLKEHQKVHTGEKLFECDICQKTFLQLGTLTTHRRTHTGEKPYTCDVCRMTFALLSSMKTHKRRAHTGEKPHKCDFCQKAFVKRNDMVRHRRTHTGERPFVCDVCCQSFTQSYVLVLHKRNHHSGDGAGGAAANKRPVAPPRDKPFKCGACHKSFASQSTLNTHNRTHTGEKPYHCDECSKSFAQSSGLVAHKAAHHAADESFGHAYAPGTGNGGPQYAAAPDVHLHRIPQYAGDRPCECAVCQSSFGQPVTVVMNEHFNQPVAAATAMSDSNNLYYG

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00135580;
90% Identity
iTF_00135580;
80% Identity
-