Nrib025695.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Nasonovia ribisnigri
Gene Symbol
-
Assembly
GCA_027563275.1
Location
JANEHQ010000049.1:138855-142449[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 28 0.21 25 6.4 0.6 1 21 40 60 40 61 0.95
2 28 5.9e-06 0.0007 20.7 3.8 1 23 96 118 96 118 0.98
3 28 3e-05 0.0035 18.5 2.7 1 23 124 146 124 146 0.99
4 28 0.0018 0.21 13.0 4.6 1 23 152 174 152 174 0.99
5 28 1.2e-06 0.00015 22.9 2.2 1 23 180 202 180 202 0.99
6 28 1.3e-05 0.0015 19.7 3.8 1 23 208 230 208 230 0.99
7 28 0.00032 0.038 15.3 2.0 1 23 236 258 236 258 0.95
8 28 4.5e-06 0.00053 21.1 2.3 1 23 264 286 264 286 0.97
9 28 1.8e-06 0.00021 22.4 0.6 1 23 292 314 292 314 0.99
10 28 0.87 1e+02 4.5 6.4 3 23 438 460 436 460 0.82
11 28 8.5e-06 0.001 20.3 1.8 1 23 466 488 466 488 0.99
12 28 1.3e-06 0.00016 22.8 0.7 1 23 494 516 494 516 0.99
13 28 4.2e-05 0.0049 18.1 4.9 1 23 522 544 522 544 0.98
14 28 0.00018 0.021 16.1 3.3 1 23 550 572 550 572 0.97
15 28 9e-06 0.0011 20.2 0.2 1 23 578 600 578 600 0.97
16 28 0.00089 0.11 13.9 1.8 1 23 626 648 626 648 0.97
17 28 7.1e-06 0.00084 20.5 0.5 1 23 654 676 654 676 0.98
18 28 0.0001 0.012 16.9 2.4 1 23 682 704 682 704 0.99
19 28 6.9e-07 8.1e-05 23.7 0.5 1 23 710 732 710 732 0.99
20 28 0.001 0.12 13.7 0.3 1 23 828 851 828 851 0.97
21 28 5.7e-06 0.00068 20.8 0.7 2 23 883 904 882 904 0.97
22 28 2.2e-06 0.00026 22.1 3.2 1 23 910 932 910 932 0.99
23 28 8.8e-05 0.01 17.1 1.2 1 23 938 960 938 960 0.98
24 28 0.0015 0.18 13.1 2.0 1 23 966 989 966 989 0.98
25 28 0.00036 0.042 15.1 4.1 1 23 995 1017 995 1017 0.98
26 28 0.00054 0.064 14.6 3.8 1 23 1023 1045 1023 1046 0.95
27 28 2.9e-05 0.0034 18.6 3.2 1 23 1072 1094 1072 1094 0.98
28 28 7.2e-05 0.0085 17.3 2.8 1 23 1100 1122 1100 1123 0.94

Sequence Information

Coding Sequence
ATGACAGAACTCCTTGCAAAAACATCAGTGGTTCAAAATGAATTGTTTCAAAATCCAATTGAGTCCAGGCATATTGAAATGGATAAAATTGATGTAGAAACTATTTTCCCAGTAGAATATATATGTTATAAATGTAAGGCTGTTTACTACAAACGAACACAAATAGAAAGACATCTAAAATTATCTCAATGTGAGGAGAAAAGTATAGTTACTGATAAAGTAGTTCCTATTATTAAGAAATTACCAGGTTTGTCAAAAAATGAATCTTATTTTAAATATAAATATCACCagtgtgaactgtgttcaaagtcttttacaaacaagaaaaagttgattcaacatattcagacacataatggcgtgaaaccatttcgttgtgaaacttgctttagaggtttttctaattcttacagtttgaagagtcatgtaaaaactcatactggtataaaactttatagatgtaacatttgtctaaaggctttttctcattcacatattttaataaatcataaaagaactcattctggtgaaaaaccgtttaaatgtgatttttgtcaaaaatgttttgctacatctggaacgttagtggcacacatacgtacacatacaggtgaacagccatataaatgtaatttatgttttaaaacgttttccttatcaagcagtttaaattcacacaaaagaacacatacaggtgacaaacctcacaaatgtattttttgttcaaaagcatttgtaaagagtggtgacttggagcggcatttgcgaactcatacaggtgtaaaaccgtttcattgcgatatgtgtgataaatcttttacacagtcgtctggattgatcatacacaaaagaaaccacacaggtgagagaccatttaagtgtgatatgtgcgaacgatcatttactaattcggctagtttaatagcacacaatcgaactcatacaggagaaataccTCATATGCCTCTACATGTCCTAAATGTACATCAGATTTCTAATACTCAAAACAGTATGCAGAAAAATATTTTTTCAGAAATACCTACAACGTCTACAACAGGTTTATGGGACACTAGTGTTCAAACACCATCAGTTGGAGATTTTAGTTACAGTTGGTCAAATTGGTTACAAAGTGAAACCGATAATATTAAAGAAGATTCAATTCAAAGTACTATTGAAGTTCCGGTACCATTTATTCAGCCTGTGTATAATGGGAGAGAAAACATTGGTGGTATGAATACAATAAATAGTGTAAGTATTTCATTAGACAATAATTTTGTACCTATCAAAAGACCCGAAGGTCGGTGGTTAGACtgtgatgtatgccacaagacttttccttattcatccaggcataaactgattgaacatcaacggacacatacccgtgaaaaaccatttaaatgctatatatgtcaaaaatcattttctttgtctagtaccttgattgtgcataaaagaatgcatacaggagaaaggccattcaaatgtgatttatgcccaaaagcatttgctcaaaagtcaaagctaaatatacataaaaggattcataccggtgtgaaaccatttcattgtgatttatgtcaaaaaacatttgctcattcttccaatctggcagaccataagaaaactcacactcaggaaagaccatataaatgtgatatttgccacaagtttttcacgctggcaaacagtttaaggaaacataaaatattacattccggttacaagccatatgtatgtgaaatatgccaaaaagcatttgccaaaaaagctagtttagaacgtcacaagggtacacatgatggtgtaccgcaatggaccaaaccatttacaaacggcgcgaaagaaaagcgaatgtgtaacgctgataagccttttaaatgccatatttgtttcaaatcgtttgctagtgtaaatggaatgactagacatgcagccaaacataatggactagatcaatttcagtgtgaaatttgtaacaagactttcacgggtttgtcagtactagctagacataaacgaatacacacgggagaaaaaccatttcagtgtgaatattgtcacaaagcgtttgcttattcatcaatattagtatctcacagacgcactcacactggggagaaaccttaccagtgcgatctttgtcccaaagcatatactcaatcctccagtttaatagttcataagcgaacccaTTGGAACCACCACCAACCAATTAACTCAATCGAACATCCAACGACAGTACCACTAGCCACTGTACCAAGGACAACAAATCAATACGAATTGCCCAATACATCGGAGGCAGACGACTACACTGACAATTGGTCGAGTTGGTATCATAGTGAGCCTGATATATCTCTTGTCACAAATGAACTGCCTACCGAAGAGCCACCCATACCAAACGCTCCTGTCCACTTACCCGTACAAACCGCGCCCAATGGCAATAATGAGAAATTAAACCAAATCGTATTGCCGCAGAAGTTCAAGTGCGCCAAGTGTAAAGAAGCTTACGACGAGAGTTATATGTTATTAAAACACATTAGGGAAGTGCACAGGGCTATCACGGTCAAAGTGAAAAATACATCCTCGTTAAAAgacgacaacgtggtcaagcagaaaaagaaacgtggcgaacgtcaacgattggaatgcgacatttgccaacggccgtttaacgactcgtacaaactgaaagtgcaccggcgaacacacacccgggagaagccgttcaaatgcgacacttgtgacaagtcgttcatcgactcgtgcaatctgaaggaacatcaaaaggtacacaccggcgagaagctgttcgagtgtgacatatgccaaaagacgtttttgcagctgggcacgttgaccacgcaccggcgcacgcacaccggcgagaagccgtacagctgtgacgtgtgccacatgacttttgcgttgctgagcagcatgaagacgcacaagcggcgcgcgcacaccggcgagaagccgcataagtgcgatttctgccagaaggcgttcgtcaagcgcaacgacatggtccggcaccggaggacgcacacgggcgaacggccgttcgtgtgcgacatttgccatcagtctttcacccagtcgtacgtgctggtgctgcacaagagaaaccaccactcgggcgacggcaccggccgggccgcaccgatggcaccagacaagtgtcggtccgcgccgccccgagacaaaccgttcaagtgcggcgcgtgccacaagtcgttcgccagccagtcgacgttaaacacgcacaaccggacgcacacgggcgaaaaaccgttccactgcgatgagtgcagcaagtcgttcacgcaatcgtcgggtctggtggcccaccggaccgcccaccacgcggcgaacaagcaaccgttcggagacgcgaacgcgctcgacacgtcgggtcgaagcaggcctcagtactccgtggcaccggatattcacaggatacctcagtacgccggcgacaggccgtgcgagtgcgcCGTGTGCCAGTCATCCAACATGTATTACGGTTAA
Protein Sequence
MTELLAKTSVVQNELFQNPIESRHIEMDKIDVETIFPVEYICYKCKAVYYKRTQIERHLKLSQCEEKSIVTDKVVPIIKKLPGLSKNESYFKYKYHQCELCSKSFTNKKKLIQHIQTHNGVKPFRCETCFRGFSNSYSLKSHVKTHTGIKLYRCNICLKAFSHSHILINHKRTHSGEKPFKCDFCQKCFATSGTLVAHIRTHTGEQPYKCNLCFKTFSLSSSLNSHKRTHTGDKPHKCIFCSKAFVKSGDLERHLRTHTGVKPFHCDMCDKSFTQSSGLIIHKRNHTGERPFKCDMCERSFTNSASLIAHNRTHTGEIPHMPLHVLNVHQISNTQNSMQKNIFSEIPTTSTTGLWDTSVQTPSVGDFSYSWSNWLQSETDNIKEDSIQSTIEVPVPFIQPVYNGRENIGGMNTINSVSISLDNNFVPIKRPEGRWLDCDVCHKTFPYSSRHKLIEHQRTHTREKPFKCYICQKSFSLSSTLIVHKRMHTGERPFKCDLCPKAFAQKSKLNIHKRIHTGVKPFHCDLCQKTFAHSSNLADHKKTHTQERPYKCDICHKFFTLANSLRKHKILHSGYKPYVCEICQKAFAKKASLERHKGTHDGVPQWTKPFTNGAKEKRMCNADKPFKCHICFKSFASVNGMTRHAAKHNGLDQFQCEICNKTFTGLSVLARHKRIHTGEKPFQCEYCHKAFAYSSILVSHRRTHTGEKPYQCDLCPKAYTQSSSLIVHKRTHWNHHQPINSIEHPTTVPLATVPRTTNQYELPNTSEADDYTDNWSSWYHSEPDISLVTNELPTEEPPIPNAPVHLPVQTAPNGNNEKLNQIVLPQKFKCAKCKEAYDESYMLLKHIREVHRAITVKVKNTSSLKDDNVVKQKKKRGERQRLECDICQRPFNDSYKLKVHRRTHTREKPFKCDTCDKSFIDSCNLKEHQKVHTGEKLFECDICQKTFLQLGTLTTHRRTHTGEKPYSCDVCHMTFALLSSMKTHKRRAHTGEKPHKCDFCQKAFVKRNDMVRHRRTHTGERPFVCDICHQSFTQSYVLVLHKRNHHSGDGTGRAAPMAPDKCRSAPPRDKPFKCGACHKSFASQSTLNTHNRTHTGEKPFHCDECSKSFTQSSGLVAHRTAHHAANKQPFGDANALDTSGRSRPQYSVAPDIHRIPQYAGDRPCECAVCQSSNMYYG

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00135580;
90% Identity
iTF_01032342;
80% Identity
-