Rmai000904.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Rhopalosiphum maidis
Gene Symbol
-
Assembly
GCA_003676215.3
Location
NC:89605624-89609661[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 28 0.021 1.5 8.8 1.4 1 21 39 59 39 60 0.95
2 28 3.4e-06 0.00024 20.8 3.5 1 23 93 115 93 115 0.98
3 28 3.6e-05 0.0026 17.6 2.7 1 23 121 143 121 143 0.98
4 28 0.00019 0.013 15.3 4.5 1 23 149 171 149 171 0.99
5 28 0.025 1.8 8.6 0.3 8 23 183 198 177 198 0.93
6 28 3.6e-07 2.6e-05 23.8 1.5 1 23 204 226 204 226 0.99
7 28 0.00019 0.014 15.3 2.0 1 23 232 254 232 254 0.95
8 28 3.7e-06 0.00027 20.7 2.1 1 23 260 282 260 282 0.97
9 28 5.7e-07 4.1e-05 23.2 0.5 1 23 288 310 288 310 0.97
10 28 0.52 37 4.5 6.4 3 23 435 457 433 457 0.82
11 28 5.1e-06 0.00036 20.2 1.8 1 23 463 485 463 485 0.99
12 28 8e-07 5.7e-05 22.8 0.7 1 23 491 513 491 513 0.99
13 28 5.4e-05 0.0039 17.0 6.5 1 23 519 541 519 541 0.98
14 28 0.00036 0.026 14.4 2.5 1 23 547 569 547 569 0.97
15 28 0.013 0.92 9.5 0.4 1 23 575 596 575 596 0.93
16 28 0.00049 0.035 14.0 2.7 1 23 622 644 622 644 0.98
17 28 6e-06 0.00043 20.0 0.6 1 23 650 672 650 672 0.98
18 28 2.3e-05 0.0016 18.2 0.5 1 23 678 700 678 700 0.99
19 28 4.1e-07 2.9e-05 23.7 0.5 1 23 706 728 706 728 0.99
20 28 0.0018 0.13 12.2 0.4 1 23 823 846 823 846 0.97
21 28 3.4e-06 0.00025 20.8 0.7 2 23 878 899 877 899 0.97
22 28 1.3e-06 9.4e-05 22.1 3.2 1 23 905 927 905 927 0.99
23 28 5.3e-05 0.0038 17.0 1.2 1 23 933 955 933 955 0.98
24 28 0.00063 0.045 13.6 2.2 1 23 961 984 961 984 0.98
25 28 0.00021 0.015 15.1 4.1 1 23 990 1012 990 1012 0.98
26 28 0.061 4.4 7.4 4.2 1 23 1018 1040 1018 1041 0.95
27 28 1.7e-05 0.0012 18.6 3.2 1 23 1061 1083 1061 1083 0.98
28 28 3.2e-05 0.0023 17.7 1.9 1 23 1089 1111 1089 1112 0.93

Sequence Information

Coding Sequence
ATGACAGAACACCTAGCAAAAACATTAGTGGGAAATGAATCTtatcaaaattcaattaagTCTAGACATATTGAAATGGATAAAACTGAAGTAGAAACTAATTTTCCAGtagaatatatatgttataaatgtaatactgtATTCTATAAACGAATACACATAgagaaacatttaaaattattttgtGAGGGGAAATGTTTAGATACTGATAAAGTTcctataatcaaaaaattaccaggtttatcaaaaaatgaatctcattttcaatataaacatCACCAATGTGAACTTTGTTCAAAATCTTTTACAAACAagacaaaattaattcaacataTTCAGACACATAGTGGGGTAAAACCATTTCGTTGTGAAACTTGCTATAGAGGTTTTTCTAATTCTTACAGTTTGAAAAGTCATGAAAAAACTCATACTGGTATAAAACCTTATAGATGTGATATTTGTCAAAAAGCCTTTTCTCattcacatattttaataaaccataaaagAACTCACTCCGGAGAGAAACCATTTAAATgtgaattttcaaaatgttTTGCTACATCTGGAACGTTAGTGGCACATACACGTACACATACTGGTGAACAGCCATATAAATGTGATATATGTCAAAAAATGTTCTCCTTATCAAGCAGTTTAAATGCTCACAAAAGAACACATACAGGTGACAAACCtcacaaatgtattttttgttcaaaagCATTTGTAAAGAGTGGTGACTTAGAGCGGCATTTGCGAACTCATACAGGTGTAAAACCGTTTCATTGCGATTTGTGTGATAAATCTTTTACACAGTCGTCTGGCTTGATCATTCATAAAAGAAACCACACTGGCGAAAGACCATTTGCATGCGATACATGCGACCGGTCGTTTACGAATTCAGCTAGTTTAATAGCACATAAGCGAACTCATACAGGAGAAATACCTCATATGCCTCTACATGTCCTAAATGTTCAACAGATTTCTAATACTCAAAACACTatgcagaaaaatattttttcagaaataCCTACAACAGTTACAACAGGTTTATGGGACACTAGTGTTCCAACACCATCAGTTGGAGATTTTAGTTACAGTTGGTCAAATTGGTTTCAAAGTGAAACGGATCCTAATAACACTAAAGATCCAATTCAAAGTACCAATGAACTTTCGGTACCATTTATGCAGCCTGTGTTTAATGGGAGAGAAAACATTAGTAGtatgaatacaataaacaGTGTAAGTATTTCATTGGAGAATAATGTTGTACCCATCAAAAGACCCGAAGGCCGGTGGTTAGATTGTGATGTATGCCATAAGACTTTTCCTTATTCATCCAGACATAAATTGATTGAACACCAACGGACACATACCCgtgaaaaaccatttaaatgcTATATATGtcaaaaatcattttctttaTCTAGTACCTTGATCGTGCACAAAAGAATGCATACGGGAGAAAGGCCATTCAAATGTGATTTATGCCCAAAAGCATTTGCCCAAAAATCAAagctaaatatacataaaagaaTTCACACTGGTGTAAAACCATttcattgtaatttatgtCAAAAAACATTTGCCCATTCTTCAAATTTGTCAGACCATAAGAAAACCCACACCCAAGAAAGACCATATAAATGCGATATTTGCCACAAGTTATTCACGTTGGCTAACAGCTTAcggaaacataaaatattacactccGGTTACAAACCATATGTATGTGAAGTCTGTCAAAAAGCATTTGCCAAAACTAGTTTAGATCGCCATAAGGGTACACATGATGGTGTACCGCAATGGACAAAACCATTTACAAACAGCCTTAAAGAAAAGCGAATGAATAACATTGATAAGCCTTTTAAATgtcatatttgttttaagtcGTTTGCCAGTGTAAATGGAATGACTAGACATACAGCCAAACATAATGGACAAGATCAATTTCGATGTGAAATTTGTAACAAGACTTTCACGGGTTTGTCAGTACTAGCCAGACACAAACGAATACACACAGGTGAAAAACCATTTCAGTGTGACTATTGTCCTAAGGCTTTCGCTTATTCATCGATACTAGTATCTCACCGACGCACTCATACTGGAGAAAAACCTTACCAGTGTGATCTTTGTCCCAAAGCGTATACTCAATCCTCTAGTTTAATAGTTCATAAGCGAACACATTGGAACAATCATCAGCCAATTAACTCAATCGACCATCCAACGTCTGAACCACTTGCTCAACCAGGGACAACAAATCAATACGAATTACCAAATACATCAGAGGCCGATGACTACACTGACAATTGGTCGGGCTGGTATCCTAGCGAGCCTGATATATCTCTTGTCACAAATGAACTAGCCACTGAAGAGCCGTCTATACAAAACACAGTAACTCACTTTCCCACTCAAACTGTACCCAACAACCAAAATGAGAAAATAGACATAAACATGTTGCCGCAAAAATTCAAGTGCGCCAAGTGCAAAGAAGCTTATGACGAGAGCTTTATGTTATTGAAACACATTAGAGAAGTGCACAGGTCTAGCACAGTCAAAGTGAAAAAGACGTTCGCGTTTAAAAGCAACGACGTGGTCAAGCAGAAAAAGAAACGTGGCGAACGTCAACGATTGGAGTGCGATATTTGCCAACGACCGTTCAACGACTCGTACAAACTGAAAGTGCACCGGAGAACACACACTCGGGAGAAGCCGTTTAAATGTGACACGTGTGACAAGTCATTCATCGACTCGTGCAACCTCAAGGAACACCAGAAGGTGCACACCGGCGAGAAGCTGTTCGAGTGCGACATTTGTCAGAAGACGTTTTTGCAGCTGGGCACGTTGACAACGCACCGACGCACGCACACTGGCGAAAAGCCATACACCTGTGACGTGTGCCACATGACTTTCGCGTTGCTCAGTAGTATGAAGACGCACAAGCGGCGGGCACACACCGGCGAGAAGCCACATAAGTGTGATTTCTGCCAAAAGGCGTTCGTCAAGCGCAACGACATGGTCCGTCACCGGAGGACACACACGGGCGAACGGCCGTTCGTATGCGACATTTGCTGTCAATCGTTCACTCAATCGTACGTGCTGGTGCTACACAAAAGAAACCATCATTCGGGCGACGGGGCTGCGGTGAACAAGCGCCCGGCCGCGCCACCCCGAGACAAACCGTTCAAGTGCGGCGCCTGCCACAAATCGTTCGCCAGCCAGTCGACGTTGAACACGCACAACCGAACGCACACGGGCGAGAAACCATACCATTGCGACGAGTGCAGCAAATCGTTCACGCAATCGTCGGGCCTCGTGGCCCATAAGGCCGCACACCACGCGGCGGACAAGTCGTTCGGACACGCGTACGCGCCCGGCACCAGCAGTAGCGGACCTCAGTACGCCGCGGCTCCGGACGTCCACCTCCACAGGATACCTCAGTACGCAGGCGACAGGCCGTGCGAGTGTGCCGTGTGCCAATCGTCGTTTGGCCAGCCCGTTACCGTCATGAACGAGCACTTCAACCAACCCGTTGTCGCCCCTGTTATGTCTGTAGACAGCAACTTGTATTACGGTTAG
Protein Sequence
MTEHLAKTLVGNESYQNSIKSRHIEMDKTEVETNFPVEYICYKCNTVFYKRIHIEKHLKLFCEGKCLDTDKVPIIKKLPGLSKNESHFQYKHHQCELCSKSFTNKTKLIQHIQTHSGVKPFRCETCYRGFSNSYSLKSHEKTHTGIKPYRCDICQKAFSHSHILINHKRTHSGEKPFKCEFSKCFATSGTLVAHTRTHTGEQPYKCDICQKMFSLSSSLNAHKRTHTGDKPHKCIFCSKAFVKSGDLERHLRTHTGVKPFHCDLCDKSFTQSSGLIIHKRNHTGERPFACDTCDRSFTNSASLIAHKRTHTGEIPHMPLHVLNVQQISNTQNTMQKNIFSEIPTTVTTGLWDTSVPTPSVGDFSYSWSNWFQSETDPNNTKDPIQSTNELSVPFMQPVFNGRENISSMNTINSVSISLENNVVPIKRPEGRWLDCDVCHKTFPYSSRHKLIEHQRTHTREKPFKCYICQKSFSLSSTLIVHKRMHTGERPFKCDLCPKAFAQKSKLNIHKRIHTGVKPFHCNLCQKTFAHSSNLSDHKKTHTQERPYKCDICHKLFTLANSLRKHKILHSGYKPYVCEVCQKAFAKTSLDRHKGTHDGVPQWTKPFTNSLKEKRMNNIDKPFKCHICFKSFASVNGMTRHTAKHNGQDQFRCEICNKTFTGLSVLARHKRIHTGEKPFQCDYCPKAFAYSSILVSHRRTHTGEKPYQCDLCPKAYTQSSSLIVHKRTHWNNHQPINSIDHPTSEPLAQPGTTNQYELPNTSEADDYTDNWSGWYPSEPDISLVTNELATEEPSIQNTVTHFPTQTVPNNQNEKIDINMLPQKFKCAKCKEAYDESFMLLKHIREVHRSSTVKVKKTFAFKSNDVVKQKKKRGERQRLECDICQRPFNDSYKLKVHRRTHTREKPFKCDTCDKSFIDSCNLKEHQKVHTGEKLFECDICQKTFLQLGTLTTHRRTHTGEKPYTCDVCHMTFALLSSMKTHKRRAHTGEKPHKCDFCQKAFVKRNDMVRHRRTHTGERPFVCDICCQSFTQSYVLVLHKRNHHSGDGAAVNKRPAAPPRDKPFKCGACHKSFASQSTLNTHNRTHTGEKPYHCDECSKSFTQSSGLVAHKAAHHAADKSFGHAYAPGTSSSGPQYAAAPDVHLHRIPQYAGDRPCECAVCQSSFGQPVTVMNEHFNQPVVAPVMSVDSNLYYG

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00135580;
90% Identity
iTF_00135580;
80% Identity
-