Apis011876.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Acyrthosiphon pisum
Gene Symbol
-
Assembly
GCA_005508785.1
Location
NC:46745137-46753757[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 28 0.11 5.7 7.5 1.0 1 21 40 60 40 61 0.95
2 28 7.1e-06 0.00036 20.8 3.5 1 23 96 118 96 118 0.98
3 28 5.1e-06 0.00026 21.2 2.9 1 23 124 146 124 146 0.99
4 28 0.00039 0.019 15.3 4.5 1 23 152 174 152 174 0.99
5 28 1.5e-06 7.4e-05 22.9 2.2 1 23 180 202 180 202 0.99
6 28 6.9e-06 0.00034 20.8 1.6 1 23 208 230 208 230 0.98
7 28 0.0004 0.02 15.2 2.0 1 23 236 258 236 258 0.95
8 28 5.6e-06 0.00028 21.1 2.3 1 23 264 286 264 286 0.97
9 28 4.2e-06 0.00021 21.5 0.4 1 23 292 314 292 314 0.97
10 28 1.1 54 4.4 6.4 3 23 440 462 438 462 0.82
11 28 1.1e-05 0.00053 20.2 1.8 1 23 468 490 468 490 0.99
12 28 1.7e-06 8.3e-05 22.7 0.7 1 23 496 518 496 518 0.99
13 28 5.2e-06 0.00026 21.2 2.5 1 23 524 546 524 546 0.99
14 28 0.00075 0.038 14.4 2.5 1 23 552 574 552 574 0.97
15 28 1.1e-05 0.00056 20.1 0.2 1 23 580 602 580 602 0.97
16 28 0.0011 0.055 13.9 1.8 1 23 628 650 628 650 0.97
17 28 8.8e-06 0.00044 20.5 0.5 1 23 656 678 656 678 0.98
18 28 0.00013 0.0065 16.8 2.4 1 23 684 706 684 706 0.99
19 28 8.5e-07 4.3e-05 23.7 0.5 1 23 712 734 712 734 0.99
20 28 0.0036 0.18 12.2 0.4 1 23 830 853 830 853 0.97
21 28 7.1e-06 0.00036 20.8 0.7 2 23 885 906 884 906 0.97
22 28 2.7e-06 0.00014 22.1 3.2 1 23 912 934 912 934 0.99
23 28 0.00011 0.0055 17.0 1.2 1 23 940 962 940 962 0.98
24 28 0.0019 0.096 13.1 2.0 1 23 968 991 968 991 0.98
25 28 0.00044 0.022 15.1 4.1 1 23 997 1019 997 1019 0.98
26 28 0.00067 0.033 14.5 3.8 1 23 1025 1047 1025 1048 0.95
27 28 3.5e-05 0.0018 18.6 3.2 1 23 1074 1096 1074 1096 0.98
28 28 5.3e-06 0.00026 21.2 0.5 1 23 1102 1125 1102 1125 0.92

Sequence Information

Coding Sequence
ATGACAGAGCCCCTTGCAAAAACATCAGTGGTTCAAAATgaattgtttcaaaatccaaTTGAGTCCAGGCATGCTGAAATGGATAAAGTTGAAGTAGAAACTATTTTCCCAGtagaatatatatgttataaatgtaaGACTGTATACTACAAACGAACACAAATAGAAAGACATCTAAAATTATCTGACTGTGGGGAGAAATGTATAGTTACAGATAAAGTAGTTCCTATTATTAAGAAACTACCAGGTTTGTCAAAAAatgaatcttattttaaatataaatatcaccaGTGTGAACTGTGTTCAAAGTCTTTTACAAATAAGACAAAATTGATTCAACATATTCAGACACATAGTGGAGTGAAACCATTTCGTTGTGAAACTTGCTTTAAAGGTTTTTCTAATTCTTACAGTTTGAAGAGTCATATAAAAACTCATACTGGCATAAAACCTTATAGATGTGACATTTGTCAAAAGGCGTTTTCTcattcacatattttaataaatcataaaagaaCTCATTCCGGAGAAAAACCATTTAAAtgcgaattttgtcaaaaatgttttgCTACATCTGGAACGTTAGTGGCACATATACGTACACATACAGGTGAACAACCCTATAAATGTGATGTATGTCAAAAAACTTTTTCCTTATCAAGCAGTTTAAATTCACACAAAAGAGCCCATACAGGCGACAAACCtcacaaatgtattttttgttcaaaagcATTTGTAAAGAGTGGTGACTTGGAGCGTCATTTGCGAACTCATACAGGTGTAAAACCGTTCCATTGTGATATGTGTGATAAATCTTTTACACAGTCGTCTGGATTGATCATACACAAAAGAAACCACACAGGTGAAAGACCATTTGCATGTGATACGTGCGAACGATCATTTACTAATTCAGCTAGCTTAATAGCACACAAGCGAACTCATACGGGAGAAATACCTCATATGCCTCTACATGTCCTAAATGTACAACAGATTTCAAATTCTCAAAACACTttgcagaaaaatattttttcagaaatacCTACAACATCTACAACAGGTTTATGGGACACTAGTGTTCAAACGCCATCAGTTGGAGATTTTAGTTACAGTTGGTCGAATTGGTTTCAAAGTGAAACGGATCCTAATAATACTAAAGAAGATTCAATACAAAGTACTATTGAACTTCCGGTACCATTTATTCAGCCTGTGTATACTGGAAGAGAAAACATTGGTGGTATGAATACAATAAACAGTCTAAGTATTTCATCAGACAATACTGTTGTACCTATCAAAAGACCCGAAGGTCGGTGGTTAGACTGTGATGTATGCCACAAGACTTTTCCTTATTCGTCCAGGCATAAACTGATTGAACACCAGCGGACCCACACCCGTGAAAAACCATTTAAATGCTATATATGTCAAAAATCATTTTCTTTATCTAGTACCTTGATAGTGCATAAAAGAATGCATACAGGAGAAAGGCCTTTCAAATGTGATTTATGCCCAAAAGCATTTGCTCAAAAGTCaaagttaaatattcataaaagaaTTCATACTGGTGTAAAACCATTTCAATGTGGTTTATGTCAAAAAACGTTCGCTCACTCTTCTAATCTGGCAGACCATAAGAAAACTCACACTCAAGAAAGACCATATAAATGTGATATTTGCCATAAGTTGTTTACGCTGGCAAACAGTTTAcggaaacataaaatattacattccgGCTACAAACCATATGTATGTGAAATATGCCAAAAAGCATTTGCCAAAAAAGCTAGTTTAGAACGTCACAAGGGTACACATGATGGTGTACCGCAGTGGACCAAACCATTTACAAACGGTGTAAAAGAAAAGCGAATGAGTAACACTGATAAGCCTTTTAAATGCCATATTTGTTTCAAGTCGTTTGCTAGTGTAAATGGAATGACTAGACATGCAGCCAAACATAATGGACTAGATCAATTTCAGTGTGAAATTTGTAACAAAACGTTCACGGGTTTGTCAGTACTAGCTAGACACAAACGAATACACACGGGAGAAAAACCATTTCAGTGTGACTATTGTCACAAGGCGTTTGCTTATTCATCAATACTAGTATCTCACCGACGCACTCACACTGGGGAGAAACCTTACCAGTGTGATCTTTGTCCCAAAGCATATACCCAATCATCCAGTTTAATAGTTCATAAGCGAACCCATTGGAACCACCACCAACCAATTAACTCAATCGAACATACAACGACTGTACCACTAGCCACAGTACCAAGGACAACAAATCAATACGAATTGCCAAATACTTCGGAGGCAGACGACTACACTGACAATTGGTCGAGCTGGTATCCTAGCGAACCTGATATATCTCTTATCACAAATGAACTGCCTACCGAAGAGCCACTCTTACAAAATACTGCGGTCCATTTACCCGTACAAACTGCGCCCAACAGCCATAAAGAAAAAATAGACTTAATCATGTTGCCGCAAAAGTTCAAGTGCGCCAAGTGTAAAGAAGCTTATGACGAGAGTTTTATGTTATTGAAACACATTAGAGAAGTGCACAGGTCTATGACAGTCAAAGTGAAGAATACGTCCACGTTAAAAGGCGATGACGTGGTCAAGCAGAAAAAGAAACGAGGTGAACGTCAACGATTGGAATGCGACATTTGCCAACGGCCGTTTAACGACTCGTACAAACTGAAAGTGCACCGGCGAACACACACCCGGGAGAAGCCGTTCAAATGCGACACGTGTGACAAGTCGTTCATCGACTCGTGCAATCTGAAGGAACATCAAAAGGTGCACACCGGCGAGAAGCTGTTCGAGTGTGACATATGCCAGAAGACGTTTTTGCAGTTAGGCACGTTGACCACGCATCGGCGTACGCACACCGGCGAGAAGCCGTACAGCTGTGACGTGTGCCACATGACTTTCGCGTTACTGAGCAGCATGAAGACGCACAAGCGGCGCGCGCACACCGGCGAGAAACCGCACAAGTGCGATTTCTGCCAGAAGGCGTTCGTCAAGCGCAATGACATGGTCCGGCACCGGAGGACGCACACGGGTGAACGGCCGTTCGTGTGCGACATTTGCCATCAGTCGTTCACCCAGTCGTACGTGCTGGTGCTGCACAAGAGAAACCACCATTCGGGCGACGGGACCGGCCGGCCCGCGCTGACGACAACGGACAAGTGCCGGTCCGCGCCGCCCCGAGACAAACCGTTCAAGTGCGGCGCGTGCCACAAGTCCTTCGCCAGTCAGTCGACGTTGAACACGCACAACCGGACGCACACGGGCGAAAAACCGTTCCACTGCGACGAGTGCGGCAAGTCGTTCACGCAATCGTCGGGTCTAGTGGCCCATCGGGCCGCCTACCATGCGGCGAACAAGCCATCGTTCGGAGACGCGAACGCTCTCGACACGAGCCGAAGCAGACCTCAGTACGCCGTGGCCCCGGATATTCACAGGATACCTCAGTACGCCGGCGACAGGCCGTGCGAGTGCGCCGTGTGCCAGTCGTCGTTTATCCAGCCCATTCCCGCCGTGATCGAGCACTTCGACCATCCTGTCGCAGTCGCCCCCTCGATGTCCAACAGCAACATGTATTACGGTTAA
Protein Sequence
MTEPLAKTSVVQNELFQNPIESRHAEMDKVEVETIFPVEYICYKCKTVYYKRTQIERHLKLSDCGEKCIVTDKVVPIIKKLPGLSKNESYFKYKYHQCELCSKSFTNKTKLIQHIQTHSGVKPFRCETCFKGFSNSYSLKSHIKTHTGIKPYRCDICQKAFSHSHILINHKRTHSGEKPFKCEFCQKCFATSGTLVAHIRTHTGEQPYKCDVCQKTFSLSSSLNSHKRAHTGDKPHKCIFCSKAFVKSGDLERHLRTHTGVKPFHCDMCDKSFTQSSGLIIHKRNHTGERPFACDTCERSFTNSASLIAHKRTHTGEIPHMPLHVLNVQQISNSQNTLQKNIFSEIPTTSTTGLWDTSVQTPSVGDFSYSWSNWFQSETDPNNTKEDSIQSTIELPVPFIQPVYTGRENIGGMNTINSLSISSDNTVVPIKRPEGRWLDCDVCHKTFPYSSRHKLIEHQRTHTREKPFKCYICQKSFSLSSTLIVHKRMHTGERPFKCDLCPKAFAQKSKLNIHKRIHTGVKPFQCGLCQKTFAHSSNLADHKKTHTQERPYKCDICHKLFTLANSLRKHKILHSGYKPYVCEICQKAFAKKASLERHKGTHDGVPQWTKPFTNGVKEKRMSNTDKPFKCHICFKSFASVNGMTRHAAKHNGLDQFQCEICNKTFTGLSVLARHKRIHTGEKPFQCDYCHKAFAYSSILVSHRRTHTGEKPYQCDLCPKAYTQSSSLIVHKRTHWNHHQPINSIEHTTTVPLATVPRTTNQYELPNTSEADDYTDNWSSWYPSEPDISLITNELPTEEPLLQNTAVHLPVQTAPNSHKEKIDLIMLPQKFKCAKCKEAYDESFMLLKHIREVHRSMTVKVKNTSTLKGDDVVKQKKKRGERQRLECDICQRPFNDSYKLKVHRRTHTREKPFKCDTCDKSFIDSCNLKEHQKVHTGEKLFECDICQKTFLQLGTLTTHRRTHTGEKPYSCDVCHMTFALLSSMKTHKRRAHTGEKPHKCDFCQKAFVKRNDMVRHRRTHTGERPFVCDICHQSFTQSYVLVLHKRNHHSGDGTGRPALTTTDKCRSAPPRDKPFKCGACHKSFASQSTLNTHNRTHTGEKPFHCDECGKSFTQSSGLVAHRAAYHAANKPSFGDANALDTSRSRPQYAVAPDIHRIPQYAGDRPCECAVCQSSFIQPIPAVIEHFDHPVAVAPSMSNSNMYYG

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00135580;
90% Identity
iTF_01032342;
80% Identity
-