Tmat001631.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Thalpophila matura
Gene Symbol
-
Assembly
GCA_948465475.1
Location
OX419193.1:7790337-7807582[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 18 9.5e-05 0.0065 17.2 0.1 3 23 135 155 134 155 0.97
2 18 8.7e-07 5.9e-05 23.6 1.2 1 23 161 183 161 183 0.99
3 18 5.4e-06 0.00037 21.1 2.7 1 23 189 211 189 211 0.99
4 18 3.6e-06 0.00024 21.7 2.6 1 23 226 248 226 248 0.98
5 18 8.6e-05 0.0059 17.3 0.6 1 23 263 285 263 285 0.98
6 18 4.9e-05 0.0034 18.1 3.1 1 23 300 322 300 322 0.98
7 18 3.4e-07 2.4e-05 24.9 1.5 1 23 337 359 337 359 0.99
8 18 0.00015 0.01 16.6 2.8 1 23 365 387 365 387 0.98
9 18 1.1e-05 0.00074 20.2 2.1 1 23 393 415 393 415 0.99
10 18 0.035 2.4 9.1 1.8 1 23 422 444 422 444 0.98
11 18 5.8e-07 4e-05 24.2 2.3 1 23 450 472 450 472 0.99
12 18 0.04 2.8 8.9 1.8 1 23 479 501 479 501 0.98
13 18 2.4e-06 0.00016 22.2 1.5 1 23 507 529 507 529 0.99
14 18 0.00045 0.031 15.1 0.7 1 23 536 558 536 558 0.99
15 18 2.6e-06 0.00018 22.1 1.9 1 23 564 586 564 586 0.98
16 18 0.0019 0.13 13.1 0.3 1 20 592 611 592 614 0.93
17 18 3.1e-05 0.0022 18.7 1.3 2 23 621 642 620 642 0.96
18 18 2.9e-06 0.0002 22.0 1.3 1 23 648 671 648 671 0.97

Sequence Information

Coding Sequence
ATGTTCGAACAGCAGATCAAGGCTGAACCCATGAGTTTCTACACATCTCATCCACACGTACACTCCGGTCCCCCAACAATAATACGGTCAGATTCAAGTCACGCATCCATCATCAACATGAATCAACATCATCAGACACACCAAGAGGATTCTAAAGACAGCCTCATAGTTCAACAGCAAGTACAACATCAGCAAGATCTCATGGAACAACACCAACAACAACAAGAAATGCAACAGCAAGACGACGAGTTGAGCTTCAAAGGGATGGAAGACGAAGGCGTTGAAATGGATATGGACGGACGACAATGTTCTCAGGGTATGGGAGTGGACATGGGATCAGTACAAACTAAAATGGAAGTGTCAAACGGAGGTCAGTCGACACCACGATCTAAACCCCAGGCCTGTAAGGTCTGTGGCAAAGTTCTGTCGTCTGCCTCATCTTACTATGTCCACATGAAGCTTCACTCAGGAAATAAACCCTTTCAGTGCACTgtgtgcgatgcagctttttgccgcaagccctacctagaggtgcatatgcgcacccacacgggcgaacgcccttttcagtgcgacctttgcctgaagcgatttacgcagaaatccagtctcaacacgcacaaacgtgttcacacagatgagcacatgcgcgcgttgatggtgaaggaccggccctacaagtgtgagctctgtcagatgcggttcacgcagagctccagcctcaaccgacacaagaaaattcacacggAGGAACACAGACGCGCGCTGCTGGCTAAGGATCGGCCCTACCAGTGCGGCATCTGCTTTGTGAGATTCACCCAGAAATCAAGTTTGGGCCGGCACGGAAAAATACATACCGAGGAGCACAGACGAGCCCTGTTAGAGAAAGTgcggccgtaccagtgccacatctgttttatgcgcttcactcagaagtccagcctgggacgacatgggaaaatacacactgAGGAGCACATCCAATCGCTGATCAACAAAGTgcgcccctatcaatgcgacatctgtgacaagcggttcactcagaagtccagccttggcactcataaacgtatacacaccggggagcggccgttccagtgcaccgtctgcctcaagtccttcacgcagaagtgcgcgctcaatttgcacgaaaaaatacatacgggcgagcggccctatcagtgcgacgcgtgtctgaagcgcttcacgcagaagtccagcctcaatatacataagaggacgcacacagtccagggcagaccgttccagtgcctgtcgtgccccgccgccttcacctgcaagcaatacctggagatacacacgcgcacccacaccggcgagcggccctatcagtgcgacatctgcctgaagcgcttcactcagaaatccagtctcaacatccacaagcggacgcactcagtgcaggggcggcccttccagtgcctgcagtgccccgccgccttcacctgcaagcagtacctcgagatccacaaccgcacgcacaccggcgagcggccctaccagtgtgacgtatgcctcaagagattcgcgcaaaaatctacactcaatatacacaaacgaacgcacacagtgcaagggcgtccataccaatgcatggagtgtccggcggcgttcacttgcaagccgtacctggagatacacatgcgtacccacacgggggaaaggccgttcgagtgcgatgtctgttacaaacgcttcacgcagaaatccacgctcaacattcacaagcgaattcataccgGTGAACGCCCTTATGCTTGTGATATTTGTCAGAAACGTTTTGCAGTGAAGAGTTATGTAACAGCGCACAGATGGTCGCACGTGGCGGACAAGCCGCTGAACTGCGACCGCTGCTCCATGTCGTTCACGTCCAAGTCGCAGTTCGCGCTGCACATCCGCACGCACTCCACCGGCTCCTGCTACGAGTGCAGCGTCTGCGGACGGTCCTTCGTGCGGGACAGCTATCTAATAAGACACCACAATCGTGTCCACCGCGAGAACCACAGCAATGTGTCAGCGAACAGCATCGGCACCATCAACAGTGTTGCCACCAACACCAACAACTCCAGCAACTTCGACTCCCCCGGCGTTTGTGACTTAAGCTTTGTACCAATGGTAAATCGGTACATGACATCTCAAGGGACACAAGTGTCCATGCAAGACACGAGCAAAATGTCAGCGATGTCGCCACAGTCTATTGCGTCGATTTCGTCGCCCCCTCCCTCGCATACTCCTACGCCGCAGCCCCAGATGTCCGGTCAGATGCATCTTGCAGACTGA
Protein Sequence
MFEQQIKAEPMSFYTSHPHVHSGPPTIIRSDSSHASIINMNQHHQTHQEDSKDSLIVQQQVQHQQDLMEQHQQQQEMQQQDDELSFKGMEDEGVEMDMDGRQCSQGMGVDMGSVQTKMEVSNGGQSTPRSKPQACKVCGKVLSSASSYYVHMKLHSGNKPFQCTVCDAAFCRKPYLEVHMRTHTGERPFQCDLCLKRFTQKSSLNTHKRVHTDEHMRALMVKDRPYKCELCQMRFTQSSSLNRHKKIHTEEHRRALLAKDRPYQCGICFVRFTQKSSLGRHGKIHTEEHRRALLEKVRPYQCHICFMRFTQKSSLGRHGKIHTEEHIQSLINKVRPYQCDICDKRFTQKSSLGTHKRIHTGERPFQCTVCLKSFTQKCALNLHEKIHTGERPYQCDACLKRFTQKSSLNIHKRTHTVQGRPFQCLSCPAAFTCKQYLEIHTRTHTGERPYQCDICLKRFTQKSSLNIHKRTHSVQGRPFQCLQCPAAFTCKQYLEIHNRTHTGERPYQCDVCLKRFAQKSTLNIHKRTHTVQGRPYQCMECPAAFTCKPYLEIHMRTHTGERPFECDVCYKRFTQKSTLNIHKRIHTGERPYACDICQKRFAVKSYVTAHRWSHVADKPLNCDRCSMSFTSKSQFALHIRTHSTGSCYECSVCGRSFVRDSYLIRHHNRVHRENHSNVSANSIGTINSVATNTNNSSNFDSPGVCDLSFVPMVNRYMTSQGTQVSMQDTSKMSAMSPQSIASISSPPPSHTPTPQPQMSGQMHLAD