Snon008559.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Sesamia nonagrioides
Gene Symbol
-
Assembly
GCA_017933935.1
Location
JADWQK010000411.1:71997-84320[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 18 0.00011 0.017 17.2 0.1 3 23 135 155 134 155 0.97
2 18 9.9e-07 0.00015 23.6 1.2 1 23 161 183 161 183 0.99
3 18 6.2e-06 0.00093 21.1 2.7 1 23 189 211 189 211 0.99
4 18 4.2e-06 0.00064 21.6 2.6 1 23 226 248 226 248 0.98
5 18 0.00018 0.027 16.5 0.6 1 23 263 285 263 285 0.98
6 18 5.6e-05 0.0086 18.1 3.1 1 23 300 322 300 322 0.98
7 18 3.9e-07 5.9e-05 24.9 1.5 1 23 337 359 337 359 0.99
8 18 0.00017 0.026 16.6 2.8 1 23 365 387 365 387 0.98
9 18 1.2e-05 0.0019 20.2 2.1 1 23 393 415 393 415 0.99
10 18 0.04 6 9.1 1.8 1 23 422 444 422 444 0.98
11 18 6.6e-07 0.0001 24.2 2.3 1 23 450 472 450 472 0.99
12 18 0.046 7 8.9 1.8 1 23 479 501 479 501 0.98
13 18 2.7e-06 0.00041 22.2 1.5 1 23 507 529 507 529 0.99
14 18 0.00052 0.078 15.1 0.7 1 23 536 558 536 558 0.99
15 18 3e-06 0.00045 22.1 1.9 1 23 564 586 564 586 0.98
16 18 0.0022 0.33 13.1 0.3 1 20 592 611 592 614 0.93
17 18 3.6e-05 0.0055 18.7 1.3 2 23 621 642 620 642 0.96
18 18 3.3e-06 0.0005 22.0 1.3 1 23 648 671 648 671 0.97

Sequence Information

Coding Sequence
ATGTTCGAACAGCAGATCAAGGCTGAACCCATGAGTTTCTACACATCTCACCCACACGTACACTCCGGTCCCCCAACAATAATACGGTCAGATTCAAGCCATGCATCCATCATCAACATGAACCAACATCACCAGACACACCAAGAGGATTCTAAAGACAGCCTCATAGTACAACAGCAAGTACAACACCAGCAAGATCTCATGGAACAACACCAACAACAACAAGAAATGCAACAACAAGACGACGAGTTGAGCTTCAAAGGTATGGAAGATGAAGGAGTTGACATGGATATGGACGGACGACAATGTTCTCAGGGTATGGGAGTGGACATGGGATCCGTTCAAACTAAAATGGAAGTGTCAAATGGGGGTCAGTCGACGCCACGATCCAAGCCTCAGGCCTGTAAGGTCTGCGGCAAAGTTCTGTCGTCTGCTTCCTCTTATTACGTTCACATGAAGCTTCACTCTGGAAACAAACCTTTTCAGTGTACTGTGTGCGACGCAGCTTTCTGCCGCAAACCGTACCTAGAGGTGCACATGCGCACACACACAGGGGAACGCCCTTTCCAGTGCGACCTCTGCCTCAAGCGATTCACGCAGAAATCCAGTCTCAACACGCACAAACGTGTTCACACAGATGAGCACATGCGCGCGTTGATGGTGAAGGACCGGCCCTACAAGTGTGATCTCTGTCAGATGCGGTTCACGCAGAGCTCCAGCCTCAACCGACACAAGAAAATTCACACGGAGGAACACAGACGTGCGCTGCAGGCTAAGGATCGGCCCTACCAATGCGGCGTCTGCTTTGTGAGATTCACCCAGAAATCAAGTTTGGGCCGGCACGGAAAAATACATACCGAGGAGCACAGACGAGCCCTGTTAGAGAAAGTGCGGCCGTACCAGTGCCACATCTGTTTTATGCGCTTCACTCAGAAGTCCAGCCTGGGACGACATGGGAAAATACACACTGAGGAGCACATCCAATcgctgatcaacaaagtgcgcCCCTATCAATGTGACATCTGTGACAAGCGGTTCACTCAGAAGTCCAGCCTTGGCACTCATAAACGTATACACACCGGGGAGCGGCCGTTCCAGTGCACCGTCTGCCTCAAGTCCTTCACGCAGAAGTGCGCGCTCAATTTGCACGAAAAAATACATACGGGCGAGCGGCCCTATCAGTGCGACGCGTGTCTGAAGCGCTTCACGCAGAAGTCCAGCCTCAATATACATAAGAGGACGCACACAGTCCAGGGCAGACCGTTCCAGTGCCTGTCGTGCCCCGCCGCCTTCACCTGCAAGCAATACCTGGAGATACACACGCGCACGCACACCGGCGAGCGGCCCTATCAGTGCGACATCTGCCTGAAGCGCTTCACGCAGAAGTCCAGTCTCAACATCCACAAACGGACTCACTCAGTGCAGGGGCGGCCCTTCCAGTGTCTGCAGTGCCCGGCCGCCTTCACCTGCAAGCAGTACCTGGAGATCCACAACCGCACCCATACCGGCGAGCGCCCCTACCAGTGTGACGTATGCCTCAAGAGATTCGCGCAAAAATCTACACTCAATATACACAAACGAACGCACACAGTGCAAGGGCGTCCGTACCAATGCATGGAGTGCCCGGCGGCGTTCACTTGCAAGCCGTACCTGGAGATACACATGCGTACTCACACGGGGGAAAGGCCGTTCGAGTGCGATGTTTGTTACAAACGCTTCACGCAGAAATCCACGCTCAACATTCACAAGCGAATTCATACCGGTGAACGCCCCTATGcttgtgatatttgtcaaaaaCGTTTTGCTGTGAAGAGCTACGTAACAGCGCACAGATGGTCCCACGTGGCGGACAAGCCGCTGAACTGCGACCGCTGCTCCATGTCGTTCACGTCGAAGTCCCAGTTTGCACTGCACATTCGCACGCACACTACCGGCTCCTGCTACGAGTGCAGTGTCTGTGGACGTTCCTTCGTAAGGGACAGCTATCTAATAAGACACCACAACCGTGTCCATCGCGAGAACCACAGCAATGTGTCGGCAAACAGCATCGGCACCATCAACAGTGTTGCTACTAACACCAACAATAGCAACTTTGACTCTCCCGGCGTTTGTGACTTAAGCTTCGTTCCGATGGTGAATCGTTACATGACATCTCAAGGGACCCAAGTGTCCATGCAGGATACTAGCAAAATGTCTGCGATGTCGCCACAGTCTATTGCGTCTATTTcgtcGCCCCCTCCCTCGCATACCCCTACGCCCCAGCCCCAGATGTCTGGTCAGATGCATCTTGCAGACTGA
Protein Sequence
MFEQQIKAEPMSFYTSHPHVHSGPPTIIRSDSSHASIINMNQHHQTHQEDSKDSLIVQQQVQHQQDLMEQHQQQQEMQQQDDELSFKGMEDEGVDMDMDGRQCSQGMGVDMGSVQTKMEVSNGGQSTPRSKPQACKVCGKVLSSASSYYVHMKLHSGNKPFQCTVCDAAFCRKPYLEVHMRTHTGERPFQCDLCLKRFTQKSSLNTHKRVHTDEHMRALMVKDRPYKCDLCQMRFTQSSSLNRHKKIHTEEHRRALQAKDRPYQCGVCFVRFTQKSSLGRHGKIHTEEHRRALLEKVRPYQCHICFMRFTQKSSLGRHGKIHTEEHIQSLINKVRPYQCDICDKRFTQKSSLGTHKRIHTGERPFQCTVCLKSFTQKCALNLHEKIHTGERPYQCDACLKRFTQKSSLNIHKRTHTVQGRPFQCLSCPAAFTCKQYLEIHTRTHTGERPYQCDICLKRFTQKSSLNIHKRTHSVQGRPFQCLQCPAAFTCKQYLEIHNRTHTGERPYQCDVCLKRFAQKSTLNIHKRTHTVQGRPYQCMECPAAFTCKPYLEIHMRTHTGERPFECDVCYKRFTQKSTLNIHKRIHTGERPYACDICQKRFAVKSYVTAHRWSHVADKPLNCDRCSMSFTSKSQFALHIRTHTTGSCYECSVCGRSFVRDSYLIRHHNRVHRENHSNVSANSIGTINSVATNTNNSNFDSPGVCDLSFVPMVNRYMTSQGTQVSMQDTSKMSAMSPQSIASISSPPPSHTPTPQPQMSGQMHLAD*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00010401;
90% Identity
iTF_01425309;
80% Identity
-