Aocu004860.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Amphipoea oculea
Gene Symbol
-
Assembly
GCA_945859585.1
Location
CAMAOF010000034.1:164640-177898[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 17 7.8e-05 0.0063 17.3 0.1 3 23 135 155 134 155 0.97
2 17 7.1e-07 5.7e-05 23.7 1.2 1 23 161 183 161 183 0.99
3 17 4.4e-06 0.00035 21.2 2.7 1 23 189 211 189 211 0.99
4 17 2.9e-06 0.00023 21.8 2.6 1 23 226 248 226 248 0.98
5 17 0.00013 0.01 16.6 0.6 1 23 263 285 263 285 0.98
6 17 4e-05 0.0032 18.2 3.1 1 23 300 322 300 322 0.98
7 17 2.8e-07 2.3e-05 24.9 1.5 1 23 337 359 337 359 0.99
8 17 8.8e-06 0.00071 20.2 2.1 1 23 365 387 365 387 0.99
9 17 0.029 2.3 9.2 1.8 1 23 394 416 394 416 0.98
10 17 4.8e-07 3.8e-05 24.2 2.3 1 23 422 444 422 444 0.99
11 17 0.033 2.6 9.0 1.8 1 23 451 473 451 473 0.98
12 17 1.9e-06 0.00016 22.3 1.5 1 23 479 501 479 501 0.99
13 17 0.00037 0.03 15.1 0.7 1 23 508 530 508 530 0.99
14 17 2.1e-06 0.00017 22.2 1.9 1 23 536 558 536 558 0.98
15 17 0.0016 0.13 13.2 0.3 1 20 564 583 564 586 0.93
16 17 2.6e-05 0.0021 18.8 1.3 2 23 593 614 592 614 0.96
17 17 2.4e-06 0.00019 22.0 1.3 1 23 620 643 620 643 0.97

Sequence Information

Coding Sequence
ATGTTCGAACAGCAGATCAAGGCTGAACCCATGAGTTTCTACACATCTCACCCACACGTACACTCCGGTCCCCCAACAATAATACGGTCAGATTCAAGCCATGCATCCATCATCAACATGAACCAACATCACCAGACACACCAAGAGGATTCTAAAGACAGCCTCATAGTACAACAGCAAGTACAACATCAGCAAGATCTCATGGAACAGCACCAACAACAACAAGAAATGCAACAACAAGACGACGAGCTGAGCTTCAAAGGGATGGAAGATGAAGGAGTTGACATGGATATGGACGGACGACAATGTTCTCAGGGTATGGGAGTGGACATGGGATCCGTTCAAACTAAAATGGAAGTGTCAAATGGGGGTCAATCGACGCCGCGATCTAAACCTCAGGCCTGTAAGGTCTGCGGCAAAGTTCTGTCGTCTGCTTCCTCTTACTATGTCCACATGAAGCTTCACTCAGGAAACAAACCTTTTCAGTGCACTGTGTGCGACgcagctttctgccgcaaaccgtacctagaggtgcacatgcgcacacacacaggggaacgccccttccagtgcgacctctgcctcaagcgattcacgcagaagtccagtctcaacacgcacaaacgtgttcacacagatgagcacatgcgcgcgttgatggtgaaggagcggccctacaagtgtgaactctgtcagatgcggttcacgcagagctccagcctcaaccgacacaagaaaattcacacggAGGAACACAGACGTGCGCTGCTGGCTAAGGATCGGCCCTACCAATGCGGCGTCTGCTTTGTGAGATTCACCCAGAAATCAAGTTTGGGCCGGCACGGAAAAATACATACCGAGGAGCACAGACGAGCCCTGTTAGAGAAAGTgcggccgtaccagtgccacatctgttttatgcgcttcactcagaagtccagcctgggacgacatgggaaaatacacactgAGGAGCACATCCAATCGCTGATCAACAAAGTgcgcccctatcaatgcgacatctgtgacaagcggttcactcagaagtccagccttggcactcataaacgtatacacaccggcgagcggccctatcagtgcgacgcgtgtctgaagcgcttcacgcagaagtccagcctcaatatacataagaggacgcacacagtccagggcagaccgttccagtgcctgtcgtgccccgccgccttcacctgcaagcaatacctggagatacacacgcgcacgcacaccggcgagcggccatatcagtgcgacatctgcctgaagcgcttcactcagaagtccagtctcaacatccacaaacggacgcactcagtgcaggggcggcccttccagtgcctgcagtgcccggccgccttcacgtgcaagcagtacctggagatccacaaccgcacacacaccggcgagcgcccctaccagtgtgacgtatgcctcaagagattcgcgcaaaaatctacactcaatatacacaaaagaacgcacacagtgcaagggcgtccgtaccaatgcatggagtgcccggcggcgttcacttgcaagccgtacctggagatacacatgcgtactcacacgggggaaaggccgttcgagtgcgatgtctgttacaaacgcttcacgcagaaatccacgctcaacattcacaagcgaattcataccgGTGAACGTCCCTATGCTTGTGATATTTGTCAGAAACGTTTTGCTGTGAAGAGCTACGTAACAGCGCACAGATGGTCGCACGTGGCCGACAAGCCGCTGAACTGCGACCGCTGCTCCATGTCGTTCACATCCAAGTCTCAGTTCGCGCTGCACATTCGCACGCACACCACCGGCTCCTGCTACGAGTGCAGCGTCTGCGGACGCTCCTTCGTAAGGGACAGCTATCTAATAAGACACCACAATCGTGTCCACCGCGAGAACCACAGCAACGTGTCGGCGAACAGCATCGGCACCATCAACAGCGTTGCTACCAACACCAACAACAGCAACTTTGACTCGCCCGGCGTTTGTGACTTAAGCTTCGTTCCAATGGTGAATCGTTACATGACATCTCAAGGGACCCAAGTTTCCATGCAGGATACCAGCAAAATGTCTGCGATGTCGCCACAGTCTATTGCGTCTATTTCGTCGCCCCCTCCCTCGCATACCCCTACGCCCCAGCCCCAGATGTCTGGTCAGATGCATCTTGCAGACTGA
Protein Sequence
MFEQQIKAEPMSFYTSHPHVHSGPPTIIRSDSSHASIINMNQHHQTHQEDSKDSLIVQQQVQHQQDLMEQHQQQQEMQQQDDELSFKGMEDEGVDMDMDGRQCSQGMGVDMGSVQTKMEVSNGGQSTPRSKPQACKVCGKVLSSASSYYVHMKLHSGNKPFQCTVCDAAFCRKPYLEVHMRTHTGERPFQCDLCLKRFTQKSSLNTHKRVHTDEHMRALMVKERPYKCELCQMRFTQSSSLNRHKKIHTEEHRRALLAKDRPYQCGVCFVRFTQKSSLGRHGKIHTEEHRRALLEKVRPYQCHICFMRFTQKSSLGRHGKIHTEEHIQSLINKVRPYQCDICDKRFTQKSSLGTHKRIHTGERPYQCDACLKRFTQKSSLNIHKRTHTVQGRPFQCLSCPAAFTCKQYLEIHTRTHTGERPYQCDICLKRFTQKSSLNIHKRTHSVQGRPFQCLQCPAAFTCKQYLEIHNRTHTGERPYQCDVCLKRFAQKSTLNIHKRTHTVQGRPYQCMECPAAFTCKPYLEIHMRTHTGERPFECDVCYKRFTQKSTLNIHKRIHTGERPYACDICQKRFAVKSYVTAHRWSHVADKPLNCDRCSMSFTSKSQFALHIRTHTTGSCYECSVCGRSFVRDSYLIRHHNRVHRENHSNVSANSIGTINSVATNTNNSNFDSPGVCDLSFVPMVNRYMTSQGTQVSMQDTSKMSAMSPQSIASISSPPPSHTPTPQPQMSGQMHLAD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00010401;
90% Identity
iTF_01425309;
80% Identity
-