Ogot065917.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Orthosia gothica
Gene Symbol
-
Assembly
GCA_949775005.1
Location
OX459067.1:3371857-3390481[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 19 0.00012 0.023 17.1 0.1 3 23 134 154 133 154 0.97
2 19 1.1e-06 0.00021 23.6 1.2 1 23 160 182 160 182 0.99
3 19 6.7e-06 0.0013 21.1 2.7 1 23 188 210 188 210 0.99
4 19 4.4e-06 0.00087 21.6 2.6 1 23 225 247 225 247 0.98
5 19 0.00019 0.038 16.5 0.6 1 23 262 284 262 284 0.98
6 19 6.1e-05 0.012 18.0 3.1 1 23 299 321 299 321 0.98
7 19 4.2e-07 8.4e-05 24.8 1.5 1 23 336 358 336 358 0.99
8 19 0.00019 0.037 16.5 2.8 1 23 364 386 364 386 0.98
9 19 0.00022 0.043 16.3 0.0 1 23 393 415 393 415 0.97
10 19 1.3e-05 0.0026 20.1 2.1 1 23 421 443 421 443 0.99
11 19 0.043 8.6 9.1 1.8 1 23 450 472 450 472 0.98
12 19 7.2e-07 0.00014 24.1 2.3 1 23 478 500 478 500 0.99
13 19 0.05 9.9 8.9 1.8 1 23 507 529 507 529 0.98
14 19 2.9e-06 0.00058 22.2 1.5 1 23 535 557 535 557 0.99
15 19 0.00056 0.11 15.0 0.7 1 23 564 586 564 586 0.99
16 19 3.2e-06 0.00064 22.0 1.9 1 23 592 614 592 614 0.98
17 19 0.0024 0.47 13.0 0.3 1 20 620 639 620 642 0.93
18 19 3.9e-05 0.0077 18.6 1.3 2 23 649 670 648 670 0.96
19 19 3.6e-06 0.00071 21.9 1.3 1 23 676 699 676 699 0.97

Sequence Information

Coding Sequence
ATGTTCGAACAGCAGATCAAGGCTGAACCTATGAGTTTCTACACATCTCATCCCCACGTACACCCCGGTCCCCCAACAATAATAAGGTCAGATAGCCATGCATCCATCATCAACATGAACCAACATCACCAGCAACACCAAGAGGATTCTAAAGATAGCCTCATAATACAACATCAAGTACAACATCAGCATGATCTCATGGAACAACATCAACAACAACAAGAAATGCAGCAACAAGACGACGAGctaAGCTTCAAAGGAATGGACGATGAAGGAGTTGACATGGATATGGACGGACGACAATGTTCTCAGGGTATGGGAGTGGACATGGGATCCGTTCAAACTAAAATGGAAGTGTCAAATGGGGGTCAGTCGACGCCACGATCTAAACCTCAGGCCTGTAAGGTATGTGGCAAAGTTTTGTCGTCGGCTTCTTCTTACTATGTCCACATGAAGCTCCACTCAGGAAACAAACCTTTTCAGTGCACTGTGTGCGACGCAGCTTTTTGCCGTAAGCCGTACCTAGAAGTGCATATGCGCACACACACAGGGGAGCGCCCCTTCCAGTGTGACCTCTGCCTCAAGCGATTCACGCAGAAGTCCAGTCTCAACACGCACAAACGTGTCCACACAGATGAGCACATGCGCGCGTTGATGGTGAAGGACCGGCCCTACAAGTGTGAGCTCTGTCAGATGCGGTTCACGCAGAGCTCCAGCCTCAACCGACACAAGAAAATTCACACGGAGGAACACAGACATGCGCTGCTGGCTAAGGATCGGCCCTACCAATGCGGCGTCTGCTTTGTGAGATTCACCCAGAAATCAAGTTTGGGCCGGCACGGAAAAATAcataccgAGGAGCACAGACGAGCCCTGTTAGAGAAAGTGCGGCCGTACCAGTGCCACATCTGTTTTATGCGCTTCACTCAGAAGTCCAGCCTGGGACGACATGGGAAAATACACACTGAGGAGCACATCCAATCGCTGATCAACAAAGTGCGCCCCTATCAATGCGACATCTGTGACAAGCGGTTCACTCAGAAGTCCAGCCTTGGCACTCATAAACGTATACACACCGGGGAGCGGCCGTTCCAGTGCACCGTCTGCCTCAAGTCCTTCACGCAGAAGTGCGCGCTCAATTTGCACGAAAAAATACATACGGTGCAAGGGCGTCCTTTCGCGTGCGGGCAATGCCCGGCGGCGTTCGCCCGCCGCCCCTACCTGGACATTCACATGCGCACGCATACAGGCGAGCGGCCCTATCAGTGCGACGCGTGTCTGAAGCGCTTCACGCAGAAGTCCAGCCTCAATATACATAAGAGGACGCACACAGTCCAGGGCAGACCGTTCCAGTGCCTGTCGTGCCCCGCCGCCTTCACCTGCAAGCAATACCTGGAGATACACACGCGCACGCACACCGGCGAGCGGCCGTATCAGTGCGACATCTGCCTGAAGCGCTTCACGCAGAAGTCCAGTCTCAACATCCACAAACGGACGCACTCAGTGCAGGGGCGGCCCTTCCAGTGCCTGCAGTGCCCGGCGGCCTTCACCTGCAAGCAGTACCTGGAGATCCACAACCGCACGCACACCGGCGAGCGCCCCTACCAGTGTGACGTATGCCTCAAGAGATTCGCGCAAAAATCTACACTCAATATACACAAACGAACGCACACAGTGCAAGGGCGTCCGTACCAATGCATGGAGTGCCCAGCAGCGTTCACTTGCAAGCCGTACCTGGAGATACACATGCGTACGCACACGGGGGAAAGGCCGTTCGAGTGCGATGTCTGTTACAAACGCTTCACGCAGAAATCCACGCTCAACATTCACAAGCGAATTCATACCGGTGAACGCCCTTATGcttgtgatatttgtcagaaacgTTTTGCTGTGAAGAGTTACGTAACAGCGCACAGATGGTCCCACGTGGCCGACAAGCCGTTGAACTGCGACCGCTGCTCGATGTCGTTCACGTCCAAGTCTCAGTTCGCGCTGCACATCCGCACGCACTCCACCGGTTCGTGCTACGAGTGCAGCGTCTGCGGACGCTCCTTCGTCAGAGACAGCTACCTAATAAGACACCACAACCGTGTCCACCGCGAGAACCACAGCAACGTGTCGGCGAACAGCCTCGGCACCATCAACAGTGTCGCCACCAACACAACACCACACAACTCGAATAACAGCAACTATGACTCGCCCGGCGTTTGTGACTTAAGCTTCGTACCCATGGTGAATCGCTACATGACATCTCAAGGGACCCAAGTGTCCATGCAGGATACCAAAATGTCTGCGATGTCGCCACAGTCTATCGCGTCTATTTCTTCGCCCCCTCCCTCGCATACCCCTACGCCCCAGCCCCAGATGTCTGGTCAGATGCATCTTGCAGACTGA
Protein Sequence
MFEQQIKAEPMSFYTSHPHVHPGPPTIIRSDSHASIINMNQHHQQHQEDSKDSLIIQHQVQHQHDLMEQHQQQQEMQQQDDELSFKGMDDEGVDMDMDGRQCSQGMGVDMGSVQTKMEVSNGGQSTPRSKPQACKVCGKVLSSASSYYVHMKLHSGNKPFQCTVCDAAFCRKPYLEVHMRTHTGERPFQCDLCLKRFTQKSSLNTHKRVHTDEHMRALMVKDRPYKCELCQMRFTQSSSLNRHKKIHTEEHRHALLAKDRPYQCGVCFVRFTQKSSLGRHGKIHTEEHRRALLEKVRPYQCHICFMRFTQKSSLGRHGKIHTEEHIQSLINKVRPYQCDICDKRFTQKSSLGTHKRIHTGERPFQCTVCLKSFTQKCALNLHEKIHTVQGRPFACGQCPAAFARRPYLDIHMRTHTGERPYQCDACLKRFTQKSSLNIHKRTHTVQGRPFQCLSCPAAFTCKQYLEIHTRTHTGERPYQCDICLKRFTQKSSLNIHKRTHSVQGRPFQCLQCPAAFTCKQYLEIHNRTHTGERPYQCDVCLKRFAQKSTLNIHKRTHTVQGRPYQCMECPAAFTCKPYLEIHMRTHTGERPFECDVCYKRFTQKSTLNIHKRIHTGERPYACDICQKRFAVKSYVTAHRWSHVADKPLNCDRCSMSFTSKSQFALHIRTHSTGSCYECSVCGRSFVRDSYLIRHHNRVHRENHSNVSANSLGTINSVATNTTPHNSNNSNYDSPGVCDLSFVPMVNRYMTSQGTQVSMQDTKMSAMSPQSIASISSPPPSHTPTPQPQMSGQMHLAD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00784581;
90% Identity
iTF_01425309;
80% Identity
-