Gfla020495.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Gortyna flavago
Gene Symbol
-
Assembly
GCA_963669345.1
Location
OY770144.1:9594736-9606403[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 18 0.00011 0.0089 17.2 0.1 3 23 136 156 135 156 0.97
2 18 1e-06 8.1e-05 23.6 1.2 1 23 162 184 162 184 0.99
3 18 6.2e-06 0.00051 21.1 2.7 1 23 190 212 190 212 0.99
4 18 4.1e-06 0.00033 21.7 2.6 1 23 227 249 227 249 0.98
5 18 0.00018 0.015 16.5 0.6 1 23 264 286 264 286 0.98
6 18 5.7e-05 0.0046 18.1 3.1 1 23 301 323 301 323 0.98
7 18 4e-07 3.2e-05 24.9 1.5 1 23 338 360 338 360 0.99
8 18 0.00018 0.014 16.6 2.8 1 23 366 388 366 388 0.98
9 18 1.2e-05 0.001 20.2 2.1 1 23 394 416 394 416 0.99
10 18 0.04 3.3 9.1 1.8 1 23 423 445 423 445 0.98
11 18 6.7e-07 5.4e-05 24.2 2.3 1 23 451 473 451 473 0.99
12 18 0.047 3.8 8.9 1.8 1 23 480 502 480 502 0.98
13 18 2.7e-06 0.00022 22.2 1.5 1 23 508 530 508 530 0.99
14 18 0.00052 0.042 15.1 0.7 1 23 537 559 537 559 0.99
15 18 3e-06 0.00025 22.1 1.9 1 23 565 587 565 587 0.98
16 18 0.0022 0.18 13.1 0.3 1 20 593 612 593 615 0.93
17 18 3.6e-05 0.003 18.7 1.3 2 23 622 643 621 643 0.96
18 18 3.3e-06 0.00027 22.0 1.3 1 23 649 672 649 672 0.97

Sequence Information

Coding Sequence
ATGTTCGAACAGCAGATCAAGGCTGAACCCATGAGTTTCTACACATCGCACCCACACGTACACTCCGGTCCCCCAACAATAATACGGACAGATTCAAGCCATGCATCCATCATCAACATGAACCAACATCACCAGACACACCAAGAGGATTCTAAAGACAGCCTCATAGTACAACAGCAAGTACAACATCAGCAAGATCTCATGGAACAgcaccaacaacaacaacaagaaatGCAACAACAAGACGACGAGCTGAGCTTCAAAGGGATGGAAGATGAAGGAGTTGACATGGATATGGACGGACGACAATGTTCTCAGGGTATGGGAGTGGACATGGGATCCGTTCAAACTAAAATGGAAGTGTCAAATGGGGGTCAGTCGACGCCGCGTTCTAAACCTCAGGCCTGTAAGGTCTGCGGCAAAGTTCTGTCGTCTGCTTCCTCTTACTATGTCCACATGAAACTTCACTCAGGAAACAAACCTTTTCAGTGTAcaGTGTGCGACGCAGCTTTCTGCCGCAAACCGTACCTAGAGGTGCACATGCGCACACACACAGGGGAACGTCCCTTCCAGTGCGATCTCTGCCTCAAGCGATTCACGCAGAAGTCCAGTCTCAACACGCACAAACGTGTTCACACAGATGAGCACATGCGCGCGTTGATGGTGAAGGACCGGCCCTACAAGTGTGAGCTCTGTCAGATGCGGTTCACGCAGAGCTCCAGCCTCAACCGACACAAGAAAATTCACACGGAGGAACACAGACGTGCGCTGCTGGCTAAGGATCGGCCCTACCAATGCGGCGTCTGCTTTGTGAGATTCACCCAGAAATCAAGTTTGGGCCGGCACGGAAAAATACATACCGAGGAGCACAGACGAGCCCTGTTAGAGAAAGTGCGGCCGTACCAGTGCCACATCTGTTTTATGCGCTTCACTCAGAAGTCCAGCCTGGGACGACATGGGAAAATACACACTGAGGAGCACATCCAATCGCTGATCAACAAAGTGCGCCCCTATCAATGCGACATCTGTGACAAGCGGTTCACTCAGAAGTCCAGCCTTGGCACTCATAAACGTATACACACCGGGGAGCGGCCGTTCCAGTGCACCGTCTGCCTCAAGTCCTTCACGCAGAAGTGCGCGCTCAATTTGCACGAAAAAATACATACGGGCGAGCGGCCCTATCAGTGCGACGCGTGTCTGAAGCGCTTCACGCAGAAGTCCAGCCTCAATATACATAAGAGGACGCACACAGTCCAGGGCAGACCGTTCCAGTGCCTGTCGTGCCCCGCCGCCTTCACCTGCAAGCAATACCTGGAGATACACACGCGCACGCACACCGGTGAGCGGCCCTATCAGTGCGACATCTGCCTGAAGCGCTTCACTCAGAAGTCCAGTCTCAACATCCACAAACGGACGCACTCAGTGCAGGGGCGGCCCTTCCAGTGCCTGCAGTGCCCGGCCGCCTTCACGTGCAAGCAGTACCTGGAGATCCACAACCGCACACACACCGGCGAGCGCCCCTACCAGTGTGACGTATGCCTCAAGAGATTCGCGCAAAAATCTACACTCAATATACACAAACGAACGCACACAGTGCAAGGGCGTCCGTACCAATGCATGGAGTGCCCGGCGGCGTTCACTTGCAAGCCGTACCTGGAGATACACATGCGTACTCACACGGGGGAAAGGCCGTTCGAGTGCGATGTCTGTTACAAACGCTTCACGCAGAAATCCACGCTCAACATTCACAAGCGAATTCATACCGGTGAACGGCCCTACGCTTGTGATATTTGTCAGAAACGTTTTGCTGTGAAGAGCTACGTAACAGCGCACAGATGGTCGCACGTGGCCGACAAGCCGCTGAACTGCGACCGCTGCTCCATGTCGTTCACATCCAAGTCTCAGTTCGCGCTGCACATTCGCACGCACACCACCGGCTCCTGCTACGAGTGCAGCGTCTGCGGACGCTCCTTCGTAAGGGACAGCTATCTAATaagACACCACAACCGTGTCCACCGCGAGAACCACAGCAACGTGTCTGCGAACAGCATCGGCACCATCAACAGCGTTGCTACCAACACCAACAACAGCAACTTTGACTCGCCCGGCGTTTGTGACTTAAGCTTCGTTCCAATGGTGAATCGTTACATGACATCTCAAGGGACCCAAGTGTCCATGCAGGATACCAGCAAAATGTCTGCGATGTCGCCACAGTCTATTGCGTCTATTTcgTCGCCCCCTCCCTCGCATACCCCTACGCCCCAGCCCCAGATGTCTGGTCAGATGCATCTCGCAGACTGA
Protein Sequence
MFEQQIKAEPMSFYTSHPHVHSGPPTIIRTDSSHASIINMNQHHQTHQEDSKDSLIVQQQVQHQQDLMEQHQQQQQEMQQQDDELSFKGMEDEGVDMDMDGRQCSQGMGVDMGSVQTKMEVSNGGQSTPRSKPQACKVCGKVLSSASSYYVHMKLHSGNKPFQCTVCDAAFCRKPYLEVHMRTHTGERPFQCDLCLKRFTQKSSLNTHKRVHTDEHMRALMVKDRPYKCELCQMRFTQSSSLNRHKKIHTEEHRRALLAKDRPYQCGVCFVRFTQKSSLGRHGKIHTEEHRRALLEKVRPYQCHICFMRFTQKSSLGRHGKIHTEEHIQSLINKVRPYQCDICDKRFTQKSSLGTHKRIHTGERPFQCTVCLKSFTQKCALNLHEKIHTGERPYQCDACLKRFTQKSSLNIHKRTHTVQGRPFQCLSCPAAFTCKQYLEIHTRTHTGERPYQCDICLKRFTQKSSLNIHKRTHSVQGRPFQCLQCPAAFTCKQYLEIHNRTHTGERPYQCDVCLKRFAQKSTLNIHKRTHTVQGRPYQCMECPAAFTCKPYLEIHMRTHTGERPFECDVCYKRFTQKSTLNIHKRIHTGERPYACDICQKRFAVKSYVTAHRWSHVADKPLNCDRCSMSFTSKSQFALHIRTHTTGSCYECSVCGRSFVRDSYLIRHHNRVHRENHSNVSANSIGTINSVATNTNNSNFDSPGVCDLSFVPMVNRYMTSQGTQVSMQDTSKMSAMSPQSIASISSPPPSHTPTPQPQMSGQMHLAD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00010401;
90% Identity
iTF_01425309;
80% Identity
-