Samb082084.2


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Scoparia ambigualis
Gene Symbol
-
Assembly
GCA_963921215.1
Location
OY992527.1:10569484-10594887[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 18 0.0001 0.024 17.3 0.1 3 23 133 153 132 153 0.97
2 18 9e-07 0.00022 23.7 1.2 1 23 159 181 159 181 0.99
3 18 5.6e-06 0.0014 21.2 2.7 1 23 187 209 187 209 0.99
4 18 5.2e-06 0.0013 21.4 2.5 1 23 224 246 224 246 0.98
5 18 3.1e-05 0.0075 18.9 0.7 1 23 261 283 261 283 0.98
6 18 5.1e-05 0.013 18.2 3.1 1 23 298 320 298 320 0.98
7 18 3.6e-07 8.8e-05 25.0 1.5 1 23 335 357 335 357 0.99
8 18 0.00016 0.039 16.7 2.8 1 23 363 385 363 385 0.98
9 18 1.1e-05 0.0028 20.3 2.1 1 23 391 413 391 413 0.99
10 18 0.036 8.9 9.3 1.8 1 23 420 442 420 442 0.98
11 18 6.1e-07 0.00015 24.3 2.3 1 23 448 470 448 470 0.99
12 18 0.042 10 9.1 1.8 1 23 477 499 477 499 0.98
13 18 2.5e-06 0.00061 22.4 1.5 1 23 505 527 505 527 0.99
14 18 0.00011 0.027 17.2 0.8 1 23 534 556 534 556 0.99
15 18 3.1e-06 0.00076 22.1 2.0 1 23 562 584 562 584 0.98
16 18 0.002 0.49 13.2 0.3 1 20 590 609 590 612 0.93
17 18 3.9e-05 0.0095 18.6 1.4 2 23 619 640 618 640 0.96
18 18 3.5e-06 0.00087 21.9 1.4 1 23 646 669 646 669 0.97

Sequence Information

Coding Sequence
ATGTTCGAACAGCAGATCAAAGCTGAGCCTATGAGCTTCTACACATCCCATCCCCACGTTCACTCCGGTCCCCCCACAATAATCCGGTCAGACTCCAACCACCCAATCATAAACATGAACCAACACCACCAGCACCAAGAAGACTCTAAAGACAGCCTGATTATACAACAGCAAGTACAACATCAACAGGATTTAATGGAACAACACCAGCAACAAGAATTACAACAGCAAGATGATGAGTTAAGCTTTAAAGGAATGGACGATGAAGGCGTTGAAATGGAAATGGACAGCCGACAGTGTTCTCAGGGTATGGGAGTTGATATGGGATCAGTTCAAACTAAAATGGAGGTAACAAACGGGGGAGGACATACTACGCCACGGTCTAAACCACAAGCTTGCAAGgtCTGCGGTAAAGTGCTTTCGTCTGCTTCCTCATATTACGTACACATGAAGCTTCACTCCGGAAACAAACCCTTCCAGTGTACTGTTTGCGACGCGGCGTTCTGCCGCAAGCCGTACCTGGAAGTGCACATGCGCACGCACACGGGCGAGCGGCCCTTCCAGTGCGACCTCTGCCTGAAGCGGTTCACGCAGAAGTCCAGCCTCAACACGCACAAACGCGTCCACACGGATGAGCACATGCGCGCACTGATGGTGAAGGAGCGGCCCTACAGGTGCGACCTCTGTCAGATGCGGTTCACGCAGAGCTCCAGCCTCAACCGCCACAAGAAAATACACACGGAGGAACACAAACGCGCGCTGCTGGCTAAGGAACGGCCCTACCAATGCGGCATCTGCTTTGAGAGATTCACCCAGAAATCGAGTTTGGGCCGGCACGGAAAAATACATACCGAGGAGCACAGACGAGCCCTGTTAGAGAAAGTGCGGCCGTACCAGTGCCACATCTGTTTTATGCGCTTCACTCAGAAGTCCAGCCTGGGCCGACATGGGAAAATACACACTGAGGAGCACATCCAATCGCTGATCAACAAAGTGCGCCCCTATCAATGCGACATCTGTGACAAGCGGTTCACTCAGAAGTCCAGCCTTGGCACTCATAAACGTATACATACTGGGGAGCGGCCGTTCCAGTGCACCGTCTGCCTCAAGTCCTTCACGCAGAAGTGCGCGCTCAATTTGCACGAAAAAATACATACGGGCGAGCGGCCGTATCAGTGCGACGCGTGTCTGAAGCGCTTCACGCAGAAGTCCAGCCTCAATATACATAAGCGGACGCACACAGTCCAGGGCAGACCGTTCCAGTGCCTGTCGTGCCCAGCCGCCTTCACCTGCAAGCAATACCTGGAGATTCACACGCGCACGCACACCGGCGAGCGTCCGTATCAGTGCGACATCTGCCTGAAGCGCTTCACGCAGAAATCCAGTCTCAACATCCACAAGCGGACGCACTCAGTGCAGGGCCGGCCGTTCCAGTGCCTGCAGTGCCCCGCCGCCTTCACCTGCAAGCAGTACCTGGAGATACACAACCGCACGCACACCGGCGAGCGGCCGTACCAATGCGACGTGTGCCTCAAGAGATTCGCGCAAAAGTCAACACTCAACATACACAAACGAACGCACACAGTGCAAGGGCGGCCGTATCAGTGCACCGAGTGCCCCGCCGCGTTCACGTGCAAGCCGTACCTGGAGATTCACATGCGCACGCACACGGGCGAGCGGCCTTTCGAGTGCGACGTCTGTTTCAAGCGCTTCACGCAGAAATCGACGCTCAACATTCACAAGCGAATCCACACTGGTGAACGACCGTATGCTTGTGATATATGCCAAAAAAGATTTGCAGTGAAGAGCTACGTTACAGCACACAGGTGGTCGCACGTGGCCGACAAGCCGCTGAACTGCGACCGCTGCTCGATGACGTTCACGTCCAAGTCGCAGTTCGCGCTGCACATCCGCACGCACACCGCCGGGCCCTGCTACGAGTGCAGCGTGTGCGGCCGTACTTTTGTAAGGGACAGCTATCTAATAAGACACCACAACCGCGTGCACCGCGAGAACCACAGCAACGTGTCGGCGAACAGCATTAGCACCATCGCCAGCGTGGCCACCAACACCAACCACTCCGCCGCCAACTACGACTCGCCCGGCGTCTGCGACTTGAGGTATGGCAACTAA
Protein Sequence
MFEQQIKAEPMSFYTSHPHVHSGPPTIIRSDSNHPIINMNQHHQHQEDSKDSLIIQQQVQHQQDLMEQHQQQELQQQDDELSFKGMDDEGVEMEMDSRQCSQGMGVDMGSVQTKMEVTNGGGHTTPRSKPQACKVCGKVLSSASSYYVHMKLHSGNKPFQCTVCDAAFCRKPYLEVHMRTHTGERPFQCDLCLKRFTQKSSLNTHKRVHTDEHMRALMVKERPYRCDLCQMRFTQSSSLNRHKKIHTEEHKRALLAKERPYQCGICFERFTQKSSLGRHGKIHTEEHRRALLEKVRPYQCHICFMRFTQKSSLGRHGKIHTEEHIQSLINKVRPYQCDICDKRFTQKSSLGTHKRIHTGERPFQCTVCLKSFTQKCALNLHEKIHTGERPYQCDACLKRFTQKSSLNIHKRTHTVQGRPFQCLSCPAAFTCKQYLEIHTRTHTGERPYQCDICLKRFTQKSSLNIHKRTHSVQGRPFQCLQCPAAFTCKQYLEIHNRTHTGERPYQCDVCLKRFAQKSTLNIHKRTHTVQGRPYQCTECPAAFTCKPYLEIHMRTHTGERPFECDVCFKRFTQKSTLNIHKRIHTGERPYACDICQKRFAVKSYVTAHRWSHVADKPLNCDRCSMTFTSKSQFALHIRTHTAGPCYECSVCGRTFVRDSYLIRHHNRVHRENHSNVSANSISTIASVATNTNHSAANYDSPGVCDLRYGN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00010401;
90% Identity
iTF_01425309;
80% Identity
-