Crub033145.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Cerastis rubricosa
Gene Symbol
-
Assembly
GCA_949152445.1
Location
OX424544.1:11720539-11731862[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 19 0.00011 0.014 17.1 0.1 3 23 135 155 134 155 0.97
2 19 1e-06 0.00013 23.6 1.2 1 23 161 183 161 183 0.99
3 19 6.4e-06 0.0008 21.1 2.7 1 23 189 211 189 211 0.99
4 19 5.9e-06 0.00073 21.2 2.5 1 23 226 248 226 248 0.98
5 19 0.00017 0.021 16.6 0.6 1 23 263 285 263 285 0.98
6 19 5.9e-05 0.0073 18.0 3.1 1 23 300 322 300 322 0.98
7 19 4.1e-07 5.1e-05 24.8 1.5 1 23 337 359 337 359 0.99
8 19 0.00018 0.022 16.5 2.8 1 23 365 387 365 387 0.98
9 19 0.00021 0.026 16.3 0.0 1 23 394 416 394 416 0.97
10 19 1.3e-05 0.0016 20.1 2.1 1 23 422 444 422 444 0.99
11 19 0.041 5.1 9.1 1.8 1 23 451 473 451 473 0.98
12 19 6.9e-07 8.6e-05 24.1 2.3 1 23 479 501 479 501 0.99
13 19 0.048 5.9 8.9 1.8 1 23 508 530 508 530 0.98
14 19 2.8e-06 0.00035 22.2 1.5 1 23 536 558 536 558 0.99
15 19 0.00053 0.067 15.0 0.7 1 23 565 587 565 587 0.99
16 19 3.1e-06 0.00039 22.1 1.9 1 23 593 615 593 615 0.98
17 19 0.0023 0.28 13.0 0.3 1 20 621 640 621 643 0.93
18 19 3.7e-05 0.0047 18.7 1.3 2 23 650 671 649 671 0.96
19 19 3.4e-06 0.00042 21.9 1.3 1 23 677 700 677 700 0.97

Sequence Information

Coding Sequence
ATGTTTGAACAGCAAATCAAGGCTGAACCCATGAGTTTCTACACATCTCATCCACACGTACACCCCGGTCCCCCAACAATATTACGGTCAGATTCAAGCCATGCATCCATCATCAACATGAATCAACATCACCAGCAACATCAAGAGGATTCTAAAGACAGCCTCATAGTTCAACACCAAGTACAACATCAGCAAGATCTCATGGAACAACATCAACAACAACAGGAAATGCAACAACAAGATGACGAGCTGAGCTTCAAAGGAATGGACGACGATGGAGTTGACATGGATATGGACGGACGACAATGTTCTCAGGGTATGGGAGTCGACATGGGCTCAGTTCAAACTAAGATGGAAGTGTCGAATGGGGGTCAGTCGACGCCACGATCTAAACCACAGGCCTGTAAGGTCTGTGGCAAAGTTTTGTCGTCGGCTTCCTCTTACTATGTCCATATGAAGCTTCACTCAGGAAACAAACCTTTTCAGTGCACTGTGTGCGACGCAGCTTTTTGCCGTAAGCCGTACCTAGAAGTGCACATGCGCACACACACAGGGGAACGCCCCTTCCAGTGCGACCTCTGCCTCAAGCGCTTCACGCAGAAATCCAGTCTCAACACGCACAAACGTGTTCACACAGATGAGCACATGCGCGCGTTGATGGTGAAGGACCGGCCCTACAGGTGTGATCTCTGTCAGATGCGGTTCACGCAGAGCTCCAGCCTCAACCGACACAAGAAAATTCACACGGAGGAACACAGACGTGCGCTGCTGGCTAAGGATCGGCCCTACCAATGCGGCGTCTGCTATGTGAGATTCACCCAGAAATCAAGTTTGGGCCGGCACGGAAAAATACATACCGAGGAGCACAGACGAGCCCTGTTAGAGAAAGTGCGGCCGTACCAGTGCCACATCTGTTTTATGCGCTTCACTCAGAAGTCCAGCCTGGGACGACATGGGAAAATACACACTGAGGAGCACATCCAATCGCTGATCAACAAAGTGCGCCCCTATCAATGCGACATCTGTGACAAGCGGTTCACGCAGAAGTCCAGCCTTGGTACTCATAAACGTATACACACCGGGGAGCGGCCGTTCCAGTGCACCGTCTGCCTCAAGTCCTTCACGCAGAAGTGCGCGCTCAATTTGCACGAAAAAATACATACGGTGCAAGGGCGTCCTTTCGCGTGCGGGCAATGCCCGGCGGCGTTCGCCCGCCGCCCCTACCTGGACATTCACATGCGCACGCATACAGGCGAGCGGCCCTATCAGTGCGACGCGTGTCTGAAGCGCTTCACGCAGAAGTCCAGCCTCAATATACATAAGAGGACACACACAGTCCAGGGCAGACCGTTCCAGTGCCTGTCGTGCCCCGCCGCCTTCACCTGCAAGCAATACCTGGAGATACACACGCGCACGCACACCGGCGAGCGGCCGTATCAGTGCGACATCTGCCTGAAGCGCTTCACTCAGAAATCCAGTCTCAACATCCACAAGCGGACGCACTCAGTGCAGGGGCGGCCCTTCCAGTGCCTGCAGTGCCCGGCCGCCTTCACCTGCAAGCAGTACCTGGAGATCCACAACCGCACGCATACCGGCGAGCGGCCCTACCAGTGTGACGTATGCCTCAAGAGATTCGCGCAAAAATCTACACTCAATATACACAAACGAACGCACACAGTGCAAGGGCGTCCGTACCAATGCATGGAGTGCCCGGCGGCGTTCACTTGCAAGCCGTACCTGGAGATACACATGCGTACGCACACTGGGGAAAGGCCGTTCGAGTGCGATGTCTGTTACAAACGCTTCACGCAGAAATCCACGCTCAACATTCACAAGCGAATTCATACCGGTGAACGTCCTTATGCTTGTGATATTTGTCAGAAACGTTTTGCTGTGAAGAGCTATGTAACAGCGCACAGATGGTCTCACGTGGCCGATAAGCCTTTGAACTGCGACCGCTGCTCCATGTCGTTCACATCCAAGTCTCAGTTCGCGCTGCACATCCGTACGCACTCCACTGGCTCCTGCTACGAGTGCAGCGTCTGCGGACGTTCCTTCGTAAGGGACAGCTATCTAATAagACACCACAACCGTGTCCACCGCGAGAACCACAGCAACGTGTCGGCCAACAGCATCGGCACCatcaacagtgttgcgaccaaCACCAACAATTCTAACAACTTTGACTCGCCCGGCGTTTGTGACTTAAGTTTCGTTCCAATGGTGAATCGTTACATGACATCTCAGGGGACTCAAGTGTCCATGCAGGATACCAGCAAAATGTCTGCGATGTCGCCACAGTCTATTGCGTCTATTTCTTCGCCCCCTCCCTCGCATACCCCTACGCCCCAGCCCCAGATGTCTGGTCAGATGCATCTTGCAGACTGA
Protein Sequence
MFEQQIKAEPMSFYTSHPHVHPGPPTILRSDSSHASIINMNQHHQQHQEDSKDSLIVQHQVQHQQDLMEQHQQQQEMQQQDDELSFKGMDDDGVDMDMDGRQCSQGMGVDMGSVQTKMEVSNGGQSTPRSKPQACKVCGKVLSSASSYYVHMKLHSGNKPFQCTVCDAAFCRKPYLEVHMRTHTGERPFQCDLCLKRFTQKSSLNTHKRVHTDEHMRALMVKDRPYRCDLCQMRFTQSSSLNRHKKIHTEEHRRALLAKDRPYQCGVCYVRFTQKSSLGRHGKIHTEEHRRALLEKVRPYQCHICFMRFTQKSSLGRHGKIHTEEHIQSLINKVRPYQCDICDKRFTQKSSLGTHKRIHTGERPFQCTVCLKSFTQKCALNLHEKIHTVQGRPFACGQCPAAFARRPYLDIHMRTHTGERPYQCDACLKRFTQKSSLNIHKRTHTVQGRPFQCLSCPAAFTCKQYLEIHTRTHTGERPYQCDICLKRFTQKSSLNIHKRTHSVQGRPFQCLQCPAAFTCKQYLEIHNRTHTGERPYQCDVCLKRFAQKSTLNIHKRTHTVQGRPYQCMECPAAFTCKPYLEIHMRTHTGERPFECDVCYKRFTQKSTLNIHKRIHTGERPYACDICQKRFAVKSYVTAHRWSHVADKPLNCDRCSMSFTSKSQFALHIRTHSTGSCYECSVCGRSFVRDSYLIRHHNRVHRENHSNVSANSIGTINSVATNTNNSNNFDSPGVCDLSFVPMVNRYMTSQGTQVSMQDTSKMSAMSPQSIASISSPPPSHTPTPQPQMSGQMHLAD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00010401;
90% Identity
iTF_01425309;
80% Identity
-