Lnic027481.4


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Luperina nickerlii
Gene Symbol
-
Assembly
GCA_963855955.1
Location
OY979681.1:9377633-9389592[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 18 0.00011 0.012 17.2 0.1 3 23 135 155 134 155 0.97
2 18 1e-06 0.00011 23.6 1.2 1 23 161 183 161 183 0.99
3 18 6.2e-06 0.00069 21.1 2.7 1 23 189 211 189 211 0.99
4 18 4.1e-06 0.00046 21.7 2.6 1 23 226 248 226 248 0.98
5 18 0.00018 0.02 16.5 0.6 1 23 263 285 263 285 0.98
6 18 5.7e-05 0.0063 18.1 3.1 1 23 300 322 300 322 0.98
7 18 4e-07 4.4e-05 24.9 1.5 1 23 337 359 337 359 0.99
8 18 0.00028 0.031 15.9 0.0 1 23 366 388 366 388 0.97
9 18 1.2e-05 0.0014 20.2 2.1 1 23 394 416 394 416 0.99
10 18 0.04 4.5 9.1 1.8 1 23 423 445 423 445 0.98
11 18 6.7e-07 7.5e-05 24.2 2.3 1 23 451 473 451 473 0.99
12 18 0.047 5.2 8.9 1.8 1 23 480 502 480 502 0.98
13 18 2.7e-06 0.0003 22.2 1.5 1 23 508 530 508 530 0.99
14 18 0.00052 0.058 15.1 0.7 1 23 537 559 537 559 0.99
15 18 3e-06 0.00034 22.1 1.9 1 23 565 587 565 587 0.98
16 18 0.0022 0.25 13.1 0.3 1 20 593 612 593 615 0.93
17 18 3.6e-05 0.004 18.7 1.3 2 23 622 643 621 643 0.96
18 18 3.3e-06 0.00037 22.0 1.3 1 23 649 672 649 672 0.97

Sequence Information

Coding Sequence
ATGTTCGAACAGCAGATCAAGGCTGAACCCATGAGTTTCTACACATCTCACCCACATGTACACTCCGGTCCCCCAACAATAATACGGTCAGATTCAAGCCATGCATCCATCATCAACATGAACCAACATCACCAGACACACCAAGAGGATTCTAAAGACAGCCTCATAGTACAACAGCAAGTACAACATCAGCAAGATCTCATGGAACAGCACCAACAACAACAAGAAATGCAACAACAAGACGACGAGCTGAGCTTCAAAGGGATGGAAGATGAAGGAGTTGACATGGATATGGACGGACGACAATGTTCTCAGGGTATGGGAGTGGACATGGGATCCGTTCAAACTAAAATGGAAGTGTCAAATGGGGGTCAGTCGACGCCGCGATCTAAACCTCAGGCCTGTAAGGTCTGCGGCAAAGTTCTGTCGTCTGCTTCCTCTTACTATGTCCACATGAAGCTTCACTCAGGAAACAAACCTTTTCAGTGCACTGTGTGCGACGCAGCTTTCTGCCGCAAACCGTACCTAGAGGTGCACATGCGCACACACACAGGGGAACGCCCCTTCCAGTGCGACCTCTGCCTCAAGCGATTCACGCAGAAGTCCAGTCTCAACACGCACAAACGTGTTCACACAGATGAGCACATGCGCGCGTTGATGGTGAAGGACCGGCCCTACAAGTGTGAGCTCTGTCAGATGCGGTTCACGCAGAGCTCCAGCCTCAACCGACACAAGAAAATTCACACGGAGGAACACAGACGTGCGCTGCTGGCTAAGGATCGGCCCTACCAATGCGGCGTCTGCTTTGTGAGATTCACCCAGAAATCAAGTTTGGGCCGGCACGGAAAAATACATACCGAGGAGCACAGACGAGCCCTGTTAGAGAAAGTGCGGCCGTACCAGTGCCACATCTGTTTTATGCGCTTCACTCAGAAGTCCAGCCTGGGACGACATGGGAAAATACACACTGAGGAGCACATCCAATCGCTGATCAACAAAGTGCGCCCCTATCAATGCGACATCTGTGACAAGCGGTTCACTCAGAAGTCCAGCCTTGGCACTCATAAACGTATACACACCGTGCAAGGGCGTCCTTTCGCGTGCGGGCTATGCCCGGCAGCGTTCGCCCGCCGCCCCTACCTGGACATTCACATGCGCACGCATACAGGCGAGCGGCCCTATCAGTGCGACGCGTGTCTGAAGCGCTTCACGCAGAAGTCCAGCCTCAATATACATAAGAGGACGCACACAGTCCAGGGCAGACCGTTCCAGTGCCTGTCGTGCCCGGCCGCCTTCACCTGCAAGCAATACCTGGAGATACACACGCGCACGCACACCGGCGAGCGGCCCTATCAGTGCGACATCTGCCTGAAGCGCTTCACTCAGAAGTCCAGTCTCAACATCCACAAACGGACGCACTCAGTGCAGGGGCGGCCCTTCCAGTGTCTGCAGTGCCCGGCCGCCTTCACGTGCAAGCAGTACCTGGAGATCCACAACCGCACACACACCGGCGAGCGCCCCTACCAGTGTGACGTATGCCTCAAGAGATTCGCGCAAAAATCTACACTCAATATACACAAAAGAACGCACACAGTGCAAGGGCGTCCATACCAATGCATGGAGTGCCCGGCGGCGTTCACTTGCAAGCCGTACCTGGAGATACACATGCGTACTCACACGGGGGAAAGGCCGTTCGAGTGCGATGTCTGTTACAAACGCTTCACGCAGAAATCCACGCTCAACATTCACAAGCGAATTCATACCGGTGAACGTCCCTATGCTTGTGATATTTGTCAGAAACGTTTTGCTGTGAAGAGCTACGTAACAGCGCACAGATGGTCTCACGTGGCCGACAAGCCGCTGAACTGCGACCGCTGCTCCATGTCGTTCACATCCAAGTCTCAGTTCGCGCTGCACATTCGCACGCACACCACCGGCTCCTGCTACGAGTGCAGCGTCTGCGGACGCTCCTTCGTAAGGGACAGCTATCTAATaagACACCACAACCGTGTCCACCGCGAGAACCACAGCAACGTGTCGGCGAACAGCATCGGCACCATCAACAGCGTTGCTACCAACACCAACAACAGCAACTTTGACTCGCCCGGCGTTTGTGACTTAAGCTTCGTTCCTATGGTGAATCGTTACATGACATCTCAAGGGACCCAAGTGTCCATGCAGGATACCAGCAAAATGTCTGCGATGTCGCCACAGTCTATTGCGTCTATTTcgTCGCCCCCTCCCTCGCATACCCCTACGCCCCAGCCCCAGATGCCTGGCCAGATGCATCTTGCAGACTGA
Protein Sequence
MFEQQIKAEPMSFYTSHPHVHSGPPTIIRSDSSHASIINMNQHHQTHQEDSKDSLIVQQQVQHQQDLMEQHQQQQEMQQQDDELSFKGMEDEGVDMDMDGRQCSQGMGVDMGSVQTKMEVSNGGQSTPRSKPQACKVCGKVLSSASSYYVHMKLHSGNKPFQCTVCDAAFCRKPYLEVHMRTHTGERPFQCDLCLKRFTQKSSLNTHKRVHTDEHMRALMVKDRPYKCELCQMRFTQSSSLNRHKKIHTEEHRRALLAKDRPYQCGVCFVRFTQKSSLGRHGKIHTEEHRRALLEKVRPYQCHICFMRFTQKSSLGRHGKIHTEEHIQSLINKVRPYQCDICDKRFTQKSSLGTHKRIHTVQGRPFACGLCPAAFARRPYLDIHMRTHTGERPYQCDACLKRFTQKSSLNIHKRTHTVQGRPFQCLSCPAAFTCKQYLEIHTRTHTGERPYQCDICLKRFTQKSSLNIHKRTHSVQGRPFQCLQCPAAFTCKQYLEIHNRTHTGERPYQCDVCLKRFAQKSTLNIHKRTHTVQGRPYQCMECPAAFTCKPYLEIHMRTHTGERPFECDVCYKRFTQKSTLNIHKRIHTGERPYACDICQKRFAVKSYVTAHRWSHVADKPLNCDRCSMSFTSKSQFALHIRTHTTGSCYECSVCGRSFVRDSYLIRHHNRVHRENHSNVSANSIGTINSVATNTNNSNFDSPGVCDLSFVPMVNRYMTSQGTQVSMQDTSKMSAMSPQSIASISSPPPSHTPTPQPQMPGQMHLAD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00010401;
90% Identity
iTF_01425309;
80% Identity
-