Pcal025680.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Pogonomyrmex californicus
Gene Symbol
Sub1
Assembly
GCA_017141365.1
Location
JAEVLP010000139.1:692244-692791[+]

Transcription Factor Domain

TF Family
PC4
Domain
PC4 domain
PFAM
PF02229
TF Group
Unclassified Structure
Description
This domain is found at the C-terminal end of Activated RNA polymerase II transcriptional coactivator p15 from humans, YdbC from Lactococcus lactis, and other PC4 family members. p15 has a bipartite structure composed of an N-terminal regulatory domain and a carboxy-terminal cryptic DNA-binding domain [1-4]. Activity is controlled by protein kinases that target the regulatory domain.
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 2 0.053 1.8e+03 -0.6 1.8 29 37 37 45 30 45 0.81
2 2 1.1e-28 3.8e-24 84.8 0.4 1 51 55 106 55 107 0.97

Sequence Information

Coding Sequence
ATGCCGAAGTCAAAAGAATATGTATCTGATACGGACAGTAGCAGCGAAGAAGAAGTAAAGTCAAGTAAAAAAAAGCAAAAGAGAACCAGAGATGAAGATAAACCAACAAAAGATGAGAAGAAACCGACAAAGAAAGCAAAGACAGAGGATGAAGAAACTATCTGGGATTTGGGCAACAATCGTCAAGTGAATGTGAGAAACTTCAAAGGCAAATATTATGTTGATATCCGAGAAATGTATTATGATAAGGATGGTGATCTGAAACCTGGAAAGAAAGGAATATGTTTAACTATGCAACAATGGCGAAAATTCATGGATGTTGTGGAAGATGTGGATAAAGTGGCGAAATCAAAGTCTTAA
Protein Sequence
MPKSKEYVSDTDSSSEEEVKSSKKKQKRTRDEDKPTKDEKKPTKKAKTEDEETIWDLGNNRQVNVRNFKGKYYVDIREMYYDKDGDLKPGKKGICLTMQQWRKFMDVVEDVDKVAKSKS