Pbar005956.1
Basic Information
- Insect
- Pogonomyrmex barbatus
- Gene Symbol
- Sub1
- Assembly
- GCA_000187915.1
- Location
- NW:866484-868096[+]
Transcription Factor Domain
- TF Family
- PC4
- Domain
- PC4 domain
- PFAM
- PF02229
- TF Group
- Unclassified Structure
- Description
- This domain is found at the C-terminal end of Activated RNA polymerase II transcriptional coactivator p15 from humans, YdbC from Lactococcus lactis, and other PC4 family members. p15 has a bipartite structure composed of an N-terminal regulatory domain and a carboxy-terminal cryptic DNA-binding domain [1-4]. Activity is controlled by protein kinases that target the regulatory domain.
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 0.095 1e+03 -1.4 2.2 29 37 62 70 56 70 0.82 2 2 1.7e-28 1.8e-24 84.3 0.4 1 51 80 131 80 132 0.97
Sequence Information
- Coding Sequence
- ATGCGCCAGATGTCCTGCGATCTCAATCTGGAAATACTGCTCTATTTGCCAGAAGAATCAAGCTGTTTTAGAGCTGAAATGCCGAAGTCAAAAGAATATGTATCTGATACGGACAGTAGCAGCGAAgaagtattattttaataaaaaaagcaaaagagaACCAGAGATGAAGATAAGCCAACAAAAGATGAGAAGAAACCGACAAAGAAAGCAAAAACAGAGGATGAAGAAACTATCTGGGATTTGGGCAACAATCGTCAAGTGAATGTGAGAAACTTCAAAGGCAAATATTATGTTGATATCCGAGAAATGTATTATGATAAGGATGGTGATCTGAAACCTGGAAAGAAAGGAATATGTTTAACCATGCAACAATGGCGAAAATTCATGGATGTTGTGGAAGATGTGGATAAAGTGGCAAAGTCAAAATCTTAA
- Protein Sequence
- MRQMSCDLNLEILLYLPEESSCFRAEMPKSKEYVSDTDSSSEEVLF**KKQKRTRDEDKPTKDEKKPTKKAKTEDEETIWDLGNNRQVNVRNFKGKYYVDIREMYYDKDGDLKPGKKGICLTMQQWRKFMDVVEDVDKVAKSKS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01229030;
- 90% Identity
- iTF_01229030;
- 80% Identity
- -