Tcor006006.1
Basic Information
- Insect
- Trachymyrmex cornetzi
- Gene Symbol
- Sub1
- Assembly
- GCA_001594075.1
- Location
- NW:562628-563761[+]
Transcription Factor Domain
- TF Family
- PC4
- Domain
- PC4 domain
- PFAM
- PF02229
- TF Group
- Unclassified Structure
- Description
- This domain is found at the C-terminal end of Activated RNA polymerase II transcriptional coactivator p15 from humans, YdbC from Lactococcus lactis, and other PC4 family members. p15 has a bipartite structure composed of an N-terminal regulatory domain and a carboxy-terminal cryptic DNA-binding domain [1-4]. Activity is controlled by protein kinases that target the regulatory domain.
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 0.14 1.6e+03 -1.9 1.0 29 37 35 43 28 43 0.74 2 2 1.3e-27 1.6e-23 81.4 0.4 1 51 52 103 52 104 0.96
Sequence Information
- Coding Sequence
- ATGCCAAAGTCAAAAGAATATCTCTCTGACAGCGATGATAGCAGTGAAGAGgAAGTAAAATCAAAGAAgcaaaagagggaaagagaggatGATAAAGCGACGAAAGATGAGAAGAAACCAGCAAAGAAGGCGAAAACTGACGATGAAACTGTTTGGGACTTGGGCAGCAATCGTCAAGTAAATGTGAGAAATTTCAAAGGCAAATATTATGTTGATATTCGGGAGATGTATTATGACAAGGAAGGTGATTTAAAACCTGGAaaaaaaggAATATGTTTATCCATGCAACAATGGCGAAAGTTCATGGATGTTGTGGAAGAAGTGGATGAAGTGGCCAAATCAAAGagttaa
- Protein Sequence
- MPKSKEYLSDSDDSSEEEVKSKKQKREREDDKATKDEKKPAKKAKTDDETVWDLGSNRQVNVRNFKGKYYVDIREMYYDKEGDLKPGKKGICLSMQQWRKFMDVVEEVDEVAKSKS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01229030;
- 90% Identity
- iTF_00182629; iTF_00014727; iTF_00016045; iTF_01261840; iTF_00181971; iTF_00181311; iTF_01476926; iTF_00417567; iTF_01477573;
- 80% Identity
- -