Pxan006806.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Phylloecus xanthostoma
Gene Symbol
-
Assembly
GCA_030142555.1
Location
JARQTF010000311.1:1323389-1325290[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 14 0.16 11 6.7 0.5 2 23 101 122 100 122 0.94
2 14 0.0085 0.57 10.7 0.6 1 23 130 153 130 153 0.92
3 14 0.00022 0.015 15.8 1.3 1 22 159 180 159 183 0.91
4 14 0.0073 0.49 10.9 0.7 1 23 296 319 296 319 0.90
5 14 0.00014 0.0092 16.4 1.6 1 23 325 347 325 347 0.97
6 14 0.00094 0.063 13.8 1.7 1 23 353 375 353 375 0.98
7 14 5.9e-06 0.0004 20.7 1.8 1 23 381 403 381 403 0.98
8 14 0.019 1.3 9.7 0.3 1 23 416 439 416 439 0.95
9 14 0.0001 0.0068 16.8 4.0 1 23 455 478 455 478 0.97
10 14 0.00025 0.017 15.6 0.5 1 23 486 509 486 509 0.97
11 14 0.00015 0.01 16.3 1.4 1 23 515 537 515 537 0.98
12 14 0.00014 0.0095 16.3 3.5 1 23 543 565 543 565 0.98
13 14 0.0013 0.088 13.3 5.2 1 23 571 594 571 594 0.98
14 14 0.0055 0.37 11.3 0.1 3 23 602 622 600 622 0.97

Sequence Information

Coding Sequence
ATGAAAACAAGAAGACAAAGTAAATACAAAGCTGATATGCAAGCAAATACACCAGAcctaataaaaacagaattaattgattataaaacAGATGATTggtcattaaatttaaaacaagAATCCATGCAAAAGCTAACAACAACTGAATCATCATGTAGCAACAAGGACTGGTTGGAGTACGATGTTTGCAAATTAGAAGATGATTTAAGTGATTGCTTGGATCAATTCCAAGAAGTACCATCTCACCAGATCAGCCTCAAATTATCAGATAGTTATGGAGATGAAATTAATCCTAAAATAACATGTACCCTTTGTGGGGCACGGTACACTTCACaattaaaatacgaatttcacaTGGAGAGACATAAATGTGGCAGAATTGATCTTTTCGTTTGTCCATTATGCCAAAAGAAATCCACGAGTGAGAACTTATTATGGGATCATTATTTCTACCTCCACAAAAATACACAACGTTACGTTTGTATGACTTGTGGAAAACTATTTCCAAAACAATCGAAATTAAAGAATCACCAAGACAGATATAGCCATTCTGGTATAAGTGAGATACACATTGATACAGATGAAAATGGTATAACTATTGATAATACAACACTCAGAAAAATCATAGCCAAAAACGTACAAGGTATGCAAACAGGAAAATGTACATTATGTGAAAAAGAAGTTACTGATCTTGATCCTAATGCAATCAATGATGCTATAACTTGCTCCACATGTGAAGGGTCAGATCTTTCTCTAAAAGTTGATCCAGATGGAACAAAAGTAATATCACGAAGACAATATCATTGTTTAAAATGCTCAAAGCATTTTCTGCGAAAGGAAAGACTTGAGTTTCATGAGATGAGACACAATGAGGATATGAGTGAACATGTATGCAGTACTTGTGGGAAACAGTTCAGTGCCGAAAATGCCTTATATGAGCATTACCTCTTTGTACACAAAGGTGCAAGACCTCACATTTGTGAACTATGTGGAAAATCCTTCCAACTAAAAGCACGCCTCAAAGAGCATCTTCGAAGTCACACTGGAGAGCGACCCTATAAATGCGATGTATGTGATCAACGATGTATGACTGCAAATGCATTAAAACTTcataagaaaatacattatgtTCACGAACGTTTCGTTTGTCAGATTTGTAACAAGACGTTCAGCAAAAAGCAGAATATGAACGAGCATTTAGAAAAGCATTGGAAGAATGACAAGAAAATAGTATCACAGCAGGCATTCACGTGTCGTATTTGTTCCGAAGAACTTCCCACGTTTCGCCTTCTGAAATCTCATATGATAGAGTCACATGAAATTGATAGTCAAGACCCAATATTAATAGAGCAGAAACCGTGGTATAAATGCCAGCAGTGTAATGAAAAGTTTAAACATCAGATGTCATTAAAAGTTCACAGAGAAAAAGTTCATCAGGGAAAGATCAATCCAATGTTTCGTTGTGACATCTGTGATGTcacttataaaattaaacaactGTTAGCAAATCATATTAAAAGTAAGCATGATGGTGAAAAGCGTTACAAGTGCGCTCAATGTGGCAAGGGATTTAATGAGACAAAGTCTTTACATAATCACATCTTGTTGCACACTGGTAAAAAACCATTTACGTGTGATTATTGCGGAATAGCGTTTAGAAGGAAAGATTCGCGCGATCAACATCACAGGAAACATACTGGTGAACAACCTTACAAATGTCAACATTGTGATGAGACATTTTCTTCGACTAATAGTCGATCAAAACATCGTAAGCGTGTACATGAAAAGAGAGATTGTCAAATTTGTCCTGATTGTGGCGAAGAATGCATTGGGCAGCAACAGATTCGTGTTCATTTAAATATGCATCTCGGTGAAAAGTTAAGAATGCTGGAAGAATCGTGA
Protein Sequence
MKTRRQSKYKADMQANTPDLIKTELIDYKTDDWSLNLKQESMQKLTTTESSCSNKDWLEYDVCKLEDDLSDCLDQFQEVPSHQISLKLSDSYGDEINPKITCTLCGARYTSQLKYEFHMERHKCGRIDLFVCPLCQKKSTSENLLWDHYFYLHKNTQRYVCMTCGKLFPKQSKLKNHQDRYSHSGISEIHIDTDENGITIDNTTLRKIIAKNVQGMQTGKCTLCEKEVTDLDPNAINDAITCSTCEGSDLSLKVDPDGTKVISRRQYHCLKCSKHFLRKERLEFHEMRHNEDMSEHVCSTCGKQFSAENALYEHYLFVHKGARPHICELCGKSFQLKARLKEHLRSHTGERPYKCDVCDQRCMTANALKLHKKIHYVHERFVCQICNKTFSKKQNMNEHLEKHWKNDKKIVSQQAFTCRICSEELPTFRLLKSHMIESHEIDSQDPILIEQKPWYKCQQCNEKFKHQMSLKVHREKVHQGKINPMFRCDICDVTYKIKQLLANHIKSKHDGEKRYKCAQCGKGFNETKSLHNHILLHTGKKPFTCDYCGIAFRRKDSRDQHHRKHTGEQPYKCQHCDETFSSTNSRSKHRKRVHEKRDCQICPDCGEECIGQQQIRVHLNMHLGEKLRMLEES