Ttro007329.1
Basic Information
- Insect
- Trachelus troglodyta
- Gene Symbol
- -
- Assembly
- GCA_030142635.1
- Location
- JARQTJ010000433.1:1284443-1286323[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 1.2 87 4.0 1.9 2 23 94 115 93 115 0.92 2 15 0.032 2.4 8.9 0.4 1 23 123 146 123 146 0.91 3 15 0.00042 0.031 14.9 1.4 1 22 152 173 152 176 0.90 4 15 2.3 1.7e+02 3.1 0.1 2 12 213 223 213 225 0.84 5 15 0.021 1.6 9.5 0.7 1 23 289 312 289 312 0.88 6 15 0.00014 0.01 16.4 1.6 1 23 318 340 318 340 0.97 7 15 0.026 1.9 9.2 2.1 1 23 346 368 346 368 0.98 8 15 5.9e-06 0.00044 20.7 1.8 1 23 374 396 374 396 0.98 9 15 0.059 4.4 8.1 3.5 1 23 409 432 409 432 0.94 10 15 0.00014 0.011 16.3 3.4 1 23 448 471 448 471 0.97 11 15 0.00028 0.02 15.4 1.3 1 23 479 502 479 502 0.97 12 15 0.00015 0.011 16.3 1.4 1 23 508 530 508 530 0.98 13 15 9.2e-05 0.0068 16.9 3.3 1 23 536 558 536 558 0.99 14 15 0.00017 0.013 16.1 2.4 1 23 564 587 564 587 0.96 15 15 0.23 17 6.2 0.2 3 23 595 615 593 615 0.96
Sequence Information
- Coding Sequence
- atgaaaacaaaGACAAAAGAAGATAAAGTTGATATGGAACCAAATATGGCAGATGTGATAAAACCTGCTTATGAGGCAGATAATTGGTCATTAAATGGGAAACAAGAACCTATTGAAAAGCTAACACCAACTAAATCGTTATGTAGCAATAAGGATTGGTTGGCTGGCAAAATAGAAGATGATTTAAGTGATTGTTTAGATCAATTCCAAGAAGTACCGTTTAATCAGATCGGCGTAAAGTTATCAGAAAGTTATGGAGAGGAAACTAATTCTAAAATGACATGTACTCTTTGTGGAGCACGATACACTTCACatttaaaatacgaatttcataTGGAAAGACATAAATTTGGAAGAATTGATCTTTTCATCTGTCCATTGTGTCAAAGGAAATCAACGAGTGAGAACTTACTATGGGATCATTATTTCTATATCCACAAGAATACACAACGTTACATTTGCATGACTTGTGGTAAGCTATTTCCAAAACAGTCGAAACTGAAAAATCACCAAGACAAGTATAACCATTCTGGTATAAACGAGATACACATTGAAACTGATGAAAATGGTATAACTATTGACAATACAACTATTAGAAAAGCCATAGTCAAAGAGATACAAGGTATGCAAACAGGAAAATGTACATTATGTGGAAAAGAAGTTACAGATCTTGATCCTAATGCAATCAATGATGCTATAACTTGCACCATGTGTGAAGGATCAGATCTTTCTTTAATGGTTGATTCAGATGGAACAAAAGTAATATCACGAAGACAATATCATTGTTCAAAATGCACAAAGCATTTTTTACGAAAGGAAAGACTTGAATTTCACGAGATGAGACACAATGAGGACATGAGTAAACATATATGCAGTAGTTGTGGAAAGAAGTTCAGTGCTGAGAATGCCTTATATGAGCATTATATCTTTGTACACAAAGGTGCAAGACCCCATATTTGTGAACTATGTGGAAAATCCTTCCAACTAAAAGCACGCCTCAAAGAACATCTTCGAAGCCATACTGGAGAGCGACCCTATAAATGTGATGCATGTGATCAACGATGTATGACTACAAAcgcattgaaaattcacaagAAAATACATTCTGCTCATGAACGCTTTGTTTGTCAGATTTGTAACAAGACGTTCAGCAAAAAGCAGAATATGAATGAGCATTTAGAAAAGCATTGGAAGTATGACAGGAAAATAGTATTACAACAGGCATTCAAATGTCGTATTTGTTCTGAGAAGTTTCCCACGTTTCGCAGTTTAAAATGTCACATGATAGAGACGCATGAAATTGATAGTCAAGATCCAATATTAATGGAGCAGAAACCTTGGTACAAATGCGAGCAGTGTAGTGAGAAGTTTAAGCATCAAATGTCATTAAAAGTTCATAgggaaaaaattcatcaaggAAAAGTCAatccaatatttcattgtgACATATGTGATGctacttttaaaattaaacaactGTTAGCAAACCATATTAAAAGTAAGCATGATGGTGAAAAACGTTACAAGTGCGCTCAATGTGGCAAGGGATTTAATGAGACAAAGTCTTTGCATAATCATATCTTACTGCATACTGGTAAGAAACCATACACGTGCGAGTATTGCGGAATAGCGTTTAGAAGGAAAGATTCACGAGATCAGCATCACAGGAAACATACCGGTGAGCAACCTTACAAATGTCAAGATTGTGATGAGACATTTTCTTCAACTAATAATCGATCAAAACATCGTAAACAAGTACATGAGAAGAAAGATTGTCAAATTTGCCCTGATTGTGGCGACGAATGCATTGGGCAGCAACAGATTCGTATTCACTTAAATATGCATCttggtgaaaaattaaaaaagctcGAAGAGTCGTGA
- Protein Sequence
- MKTKTKEDKVDMEPNMADVIKPAYEADNWSLNGKQEPIEKLTPTKSLCSNKDWLAGKIEDDLSDCLDQFQEVPFNQIGVKLSESYGEETNSKMTCTLCGARYTSHLKYEFHMERHKFGRIDLFICPLCQRKSTSENLLWDHYFYIHKNTQRYICMTCGKLFPKQSKLKNHQDKYNHSGINEIHIETDENGITIDNTTIRKAIVKEIQGMQTGKCTLCGKEVTDLDPNAINDAITCTMCEGSDLSLMVDSDGTKVISRRQYHCSKCTKHFLRKERLEFHEMRHNEDMSKHICSSCGKKFSAENALYEHYIFVHKGARPHICELCGKSFQLKARLKEHLRSHTGERPYKCDACDQRCMTTNALKIHKKIHSAHERFVCQICNKTFSKKQNMNEHLEKHWKYDRKIVLQQAFKCRICSEKFPTFRSLKCHMIETHEIDSQDPILMEQKPWYKCEQCSEKFKHQMSLKVHREKIHQGKVNPIFHCDICDATFKIKQLLANHIKSKHDGEKRYKCAQCGKGFNETKSLHNHILLHTGKKPYTCEYCGIAFRRKDSRDQHHRKHTGEQPYKCQDCDETFSSTNNRSKHRKQVHEKKDCQICPDCGDECIGQQQIRIHLNMHLGEKLKKLEES
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01199615;
- 90% Identity
- iTF_01474181;
- 80% Identity
- -