Basic Information

Insect: Syrista parreyssii
Gene Symbol: -
Assembly: GCA_030142615.1
Location: JARQTG010000316.1:1541376-1543229[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 0.15 10 6.8 0.5 2 23 85 106 84 106 0.94

2 15 0.031 2 9.0 0.4 1 23 114 137 114 137 0.91

3 15 0.00047 0.03 14.7 1.6 1 22 143 164 143 167 0.90

4 15 2.2 1.4e+02 3.1 0.1 2 12 204 214 204 216 0.84

5 15 0.021 1.4 9.5 0.7 1 23 280 303 280 303 0.88

6 15 0.00013 0.0086 16.4 1.6 1 23 309 331 309 331 0.97

7 15 0.00058 0.037 14.4 2.4 1 23 337 359 337 359 0.99

8 15 5.8e-06 0.00037 20.7 1.8 1 23 365 387 365 387 0.98

9 15 0.058 3.7 8.1 3.5 1 23 400 423 400 423 0.94

10 15 5.4e-05 0.0035 17.7 3.5 1 23 439 462 439 462 0.97

11 15 5.8e-05 0.0038 17.6 0.5 1 23 470 493 470 493 0.98

12 15 0.00015 0.0094 16.3 1.4 1 23 499 521 499 521 0.98

13 15 5.8e-05 0.0037 17.6 1.5 1 23 527 549 527 549 0.98

14 15 8.8e-05 0.0057 17.0 2.7 1 23 555 578 555 578 0.98

15 15 0.019 1.2 9.6 0.1 3 23 586 606 584 606 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	0.15	10	6.8	0.5	2	23	85	106	84	106	0.94
2	15	0.031	2	9.0	0.4	1	23	114	137	114	137	0.91
3	15	0.00047	0.03	14.7	1.6	1	22	143	164	143	167	0.90
4	15	2.2	1.4e+02	3.1	0.1	2	12	204	214	204	216	0.84
5	15	0.021	1.4	9.5	0.7	1	23	280	303	280	303	0.88
6	15	0.00013	0.0086	16.4	1.6	1	23	309	331	309	331	0.97
7	15	0.00058	0.037	14.4	2.4	1	23	337	359	337	359	0.99
8	15	5.8e-06	0.00037	20.7	1.8	1	23	365	387	365	387	0.98
9	15	0.058	3.7	8.1	3.5	1	23	400	423	400	423	0.94
10	15	5.4e-05	0.0035	17.7	3.5	1	23	439	462	439	462	0.97
11	15	5.8e-05	0.0038	17.6	0.5	1	23	470	493	470	493	0.98
12	15	0.00015	0.0094	16.3	1.4	1	23	499	521	499	521	0.98
13	15	5.8e-05	0.0037	17.6	1.5	1	23	527	549	527	549	0.98
14	15	8.8e-05	0.0057	17.0	2.7	1	23	555	578	555	578	0.98
15	15	0.019	1.2	9.6	0.1	3	23	586	606	584	606	0.97

Sequence Information

Coding Sequence: ATGCCAGATGAAATGAACACAGATCTAATTGCTTATCAAACAGATGATTGGTCATTAAATTCAAAGCAAGAACCTATGCAAAAACTAACAACAACAGAATCATCATGTAGCAATAATGATTGGTCAGACTATAATGCTTGCAAAACAGAAGATGATTTACATGACTATTTAGATCAATTCCAAGAAGTGCCAGCTCATGAAATCAGCATCAAGTTATTAGAAAGTTATGTAGAGGAAACTAATTCTAAAATCACATGTACTCTTTGTGGGGCACGATATACTTCacaattaaaatatgaatttcacatGGAGAGACATAAATTTGGCAGAATTGATCTTTTCATCTGTCCATTATGTCAAAGAAAATCCACAAGTGAGAACTTACTATGGGATCATTATTTCTATGTCCACAAAAGTACACAACGTTACATTTGCATGACTTGTggtaaattatttccaaaacaatcaaaattgaaaaatcaccaAGACAAGTATCGTCATTCTGGTATAAGTGAGATACACATTGACACTGATGAAAATGGTATAACTATCGACAATACGACACTCAAAGAAATTATAGCTAAACAGATACAAGGTATGCAAACGGGAAAATGTACATTATGTGGAAAAGAAGTTACAGATCTCGATCCTAATGCAATCAATGATGCTATAACTTGCTCCATGTGTGAAGGATCAGATCTTTCATTAATGGTTGATTCAGATGGAACAAAAGTAATATCACGAAGACAATATCATTGTTCAAAATGCACAAAGCATTTTCTACGAAAGGAAAGACTTGAATTTCATGAGATGAGACACAATGAGGACATGAGTAAGCATATATGCAGTAGTTGTGGGAAGAAATTCAGTGCTGAGAATGCCTTATATGAGCATTACATCTTTGTACATAAAGGTGCAAGACCCCACATTTGTGAACTATGTGGAAAATCTTTTCAACTAAAAGCACGTCTCAAAGAACATCTTCGAAGTCACACTGGAGAGCGACCCTATAAATGCGATGTATGTGATCAACGATGTATGACTGCAAATGCATTGAAACTTCACAAGAAAACTCATTATGCTCATGAACGCTTTGTTTGTCAGATTTGTAACAAGACGTTCAGCAAAAAGCAGAATATGAACGAGCATTTAGAAAAGCATTGGAAGTATGACAGGAAAATAGTATTACAACAGGCATTCAAATGTCGTATTTGTTCTGAGAAATTTCCCACGTTTCGCAGTTTAAAATGTCACATGATAGAGACGCATGAAATTGATAGTCAAGATCCAATATTAATGGAGCAGAAACCTTGGTACAAATGCGAGCAATGTAATGAGAAGTTTAAGCATCAGATGTCATTAAAAGTTCATAGagagaaaattcatcaagGAAAAGTTAATCCAATATTTCGATGTGACATATGTGATGCtacttttaaaattaaacaacTGTTAGCAAACCATATTAAAAGCAAGCATGATGGAGAAAAACGTTACAAATGCGCTCAATGTGGCAAGGGATTTAATGAGACAAAGTCTTTGCATAATCATATCTTACTGCATACTGGTAAGAAACCATTCACGTGCGAGTATTGCGGAATAGCGTTTAGAAGGAAAGATTCGCGAGATCAGCATCGCAGGAATCATACTGGCGAACAACCTTACAAGTGTCAAGATTGTGATGAGACATTTTCTTCTACTAATAATCGATCAAAACATCGTAAACGAGTACATGAAAAGAGAGATTGTCAAATCTGTCCTGATTGTGGTGTTGAATGCATCGGGCAGCAACAGATTCGTATTCACCTAAATATGCATCTtggtgaaaaattgaagaagctCGAAGAATcgtga
Protein Sequence: MPDEMNTDLIAYQTDDWSLNSKQEPMQKLTTTESSCSNNDWSDYNACKTEDDLHDYLDQFQEVPAHEISIKLLESYVEETNSKITCTLCGARYTSQLKYEFHMERHKFGRIDLFICPLCQRKSTSENLLWDHYFYVHKSTQRYICMTCGKLFPKQSKLKNHQDKYRHSGISEIHIDTDENGITIDNTTLKEIIAKQIQGMQTGKCTLCGKEVTDLDPNAINDAITCSMCEGSDLSLMVDSDGTKVISRRQYHCSKCTKHFLRKERLEFHEMRHNEDMSKHICSSCGKKFSAENALYEHYIFVHKGARPHICELCGKSFQLKARLKEHLRSHTGERPYKCDVCDQRCMTANALKLHKKTHYAHERFVCQICNKTFSKKQNMNEHLEKHWKYDRKIVLQQAFKCRICSEKFPTFRSLKCHMIETHEIDSQDPILMEQKPWYKCEQCNEKFKHQMSLKVHREKIHQGKVNPIFRCDICDATFKIKQLLANHIKSKHDGEKRYKCAQCGKGFNETKSLHNHILLHTGKKPFTCEYCGIAFRRKDSRDQHRRNHTGEQPYKCQDCDETFSSTNNRSKHRKRVHEKRDCQICPDCGVECIGQQQIRIHLNMHLGEKLKKLEES

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01199615;
90% Identity: iTF_01474181;
80% Identity: -