Basic Information

Insect: Cephus pygmeus
Gene Symbol: -
Assembly: GCA_036026175.1
Location: JAYRBY010000480.1:1177285-1179174[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 0.2 19 6.5 0.7 2 23 97 118 96 118 0.94

2 15 0.033 3.1 8.9 0.4 1 23 126 149 126 149 0.91

3 15 0.00043 0.041 14.9 1.4 1 22 155 176 155 179 0.90

4 15 2.4 2.2e+02 3.1 0.1 2 12 216 226 216 228 0.84

5 15 0.022 2.1 9.5 0.7 1 23 292 315 292 315 0.88

6 15 0.00014 0.013 16.4 1.6 1 23 321 343 321 343 0.97

7 15 0.006 0.57 11.3 1.3 1 23 349 371 349 371 0.98

8 15 6.1e-06 0.00058 20.7 1.8 1 23 377 399 377 399 0.98

9 15 0.062 5.8 8.1 3.5 1 23 412 435 412 435 0.94

10 15 5.7e-05 0.0054 17.6 3.5 1 23 451 474 451 474 0.97

11 15 0.00051 0.049 14.6 1.3 1 23 482 505 482 505 0.97

12 15 0.00015 0.015 16.3 1.4 1 23 511 533 511 533 0.98

13 15 9.6e-05 0.0091 16.9 3.3 1 23 539 561 539 561 0.99

14 15 0.00018 0.017 16.1 2.4 1 23 567 590 567 590 0.96

15 15 0.24 23 6.2 0.2 3 23 598 618 596 618 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	0.2	19	6.5	0.7	2	23	97	118	96	118	0.94
2	15	0.033	3.1	8.9	0.4	1	23	126	149	126	149	0.91
3	15	0.00043	0.041	14.9	1.4	1	22	155	176	155	179	0.90
4	15	2.4	2.2e+02	3.1	0.1	2	12	216	226	216	228	0.84
5	15	0.022	2.1	9.5	0.7	1	23	292	315	292	315	0.88
6	15	0.00014	0.013	16.4	1.6	1	23	321	343	321	343	0.97
7	15	0.006	0.57	11.3	1.3	1	23	349	371	349	371	0.98
8	15	6.1e-06	0.00058	20.7	1.8	1	23	377	399	377	399	0.98
9	15	0.062	5.8	8.1	3.5	1	23	412	435	412	435	0.94
10	15	5.7e-05	0.0054	17.6	3.5	1	23	451	474	451	474	0.97
11	15	0.00051	0.049	14.6	1.3	1	23	482	505	482	505	0.97
12	15	0.00015	0.015	16.3	1.4	1	23	511	533	511	533	0.98
13	15	9.6e-05	0.0091	16.9	3.3	1	23	539	561	539	561	0.99
14	15	0.00018	0.017	16.1	2.4	1	23	567	590	567	590	0.96
15	15	0.24	23	6.2	0.2	3	23	598	618	596	618	0.96

Sequence Information

Coding Sequence: atgaaaacaaagataaaaaaggataaagtTGATATAGAACCAAATATGGCAGATGACATAAAACCTGCTTATGAGGCAAATGATTGGTCATTAAATGTGAAACAAGATCCTATTGAAAAGCTAACACCAACTAAATCATTATGTAGCAATAATGATTGGATGGCTGATAAAGCTTGCAAAATAGAAGATGATTTAAGTGATTGTTTAGATCAATTCCAAGAAGTACCGTTTAATCAGATCACCATAAAGTTATCAGAAAGTTATGGAGACGAAACTAATTCTAAAATGACATGTACTCTTTGTGGGGCACGATACACTTCACaattaaaatacgaatttcatATGGAGAGACATAAATTTGGCAGAATTGATCTCTTTATCTGTCCATTGTGTCAAAGAAAATCCACAAGTGAGAACTTACTATGGGAtcattatttctatatccacAAGAATACACAACGTTACATTTGTATGACTTGTGGTAAGCTATTTCCAAAACaatcgaaattgaaaaatcaccaAGACAAGTATAACCATTCTGGTATGAACGAGATTCACATTGAAACTGATGAAAATGGTATAACTATTGACAATACAACTATTAGAAAAGCTATTGTCAAAGAGATACAAGGTATGCAAACAGGAAAATGTACATTATGTGGAAAAGAAGTTACAGACCTTGATCCTAATGCAATCAATGATGCTATAACTTGCACCATGTGTGAAGGATCAGATCTTTCTTTAATGGTTGATTCAGATGGAGTAAAAGTAATATCACGAAGACAGTATCATTGTTCAAAATGCGCGAAGCATTTTTTGCGAAAGGAAAGACTTGAATTTCACGAGATGAGACACAATGAGGACATGAGTAAACATATATGCAGTAGTTGTGGAAAGAAGTTCAGTGCTGAGAATGCCTTATATGAGCATTATATCTTTGTACACAAAGGTGCAAGACCCCATATTTGTGAACTATGTGGAAAATCCTTCCAACTAAAAGCACGCCTTAAAGAACATCTTCGAAGCCATACTGGAGAGCGACCCTATAAATGTGATGCATGTGATCAACGATGTATGACTGCAAAtgcattgaaaattcacaaaaaaatacattctgtTCATGATCGTTTTGTTTGTCAGATTTGTAACAAAACGTTCAGCAAAAAGCAGAATATGAATGAGCATTTAGAAAAGCATTGGAAATATGACAGGAAAATAGTATTGCAACAGGCATTCAAATGTCGTATTTGTTCTGAGAAGTTTCCCACGTTTCGCAGTTTAAAATGTCACATGATAGAGACGCATGAAATTGATAGTCAAGATCCAATATTAATGGAGCAGAAACCTTGGTACAAATGCGAGCAGTGTAATGAGAAGTTTAAGCATCAAATGTCGTTAAAAGTTCATAgggaaaaaattcatcaaggAAAAGTCAATCCAATATTTCATTGTGACGTATGTGATgctacttttaaaattaaacaactgTTAGCAAACCATATTAAAAGTAAACATGATGGTGAAAAACGTTACAAGTGCGCTCAATGTGGCAAAGGATTTAATGAGACAAAGTCTTTGCACAATCATATCTTACTGCATACTGGTAAGAAACCATACACGTGCGAGTATTGCGGAATAGCGTTTAGAAGGAAAGATTCACGAGATCAGCATCACAGGAAACATACTGGTGAGCAACCGTACAAATGTCAAGATTGTGATGAGACATTTTCTTCAACTAATAATCGATCAAAACATCGTAAACAAGTACATGAGAAGAGAGATTGTCAAATTTGTCCTGATTGTGGCGACGAATGCATTGGGCAGCAACAGATTCGCATTCACTTAAATATGCATCttggtgaaaaattaaaaaagcttGAAGAGTCGTGA
Protein Sequence: MKTKIKKDKVDIEPNMADDIKPAYEANDWSLNVKQDPIEKLTPTKSLCSNNDWMADKACKIEDDLSDCLDQFQEVPFNQITIKLSESYGDETNSKMTCTLCGARYTSQLKYEFHMERHKFGRIDLFICPLCQRKSTSENLLWDHYFYIHKNTQRYICMTCGKLFPKQSKLKNHQDKYNHSGMNEIHIETDENGITIDNTTIRKAIVKEIQGMQTGKCTLCGKEVTDLDPNAINDAITCTMCEGSDLSLMVDSDGVKVISRRQYHCSKCAKHFLRKERLEFHEMRHNEDMSKHICSSCGKKFSAENALYEHYIFVHKGARPHICELCGKSFQLKARLKEHLRSHTGERPYKCDACDQRCMTANALKIHKKIHSVHDRFVCQICNKTFSKKQNMNEHLEKHWKYDRKIVLQQAFKCRICSEKFPTFRSLKCHMIETHEIDSQDPILMEQKPWYKCEQCNEKFKHQMSLKVHREKIHQGKVNPIFHCDVCDATFKIKQLLANHIKSKHDGEKRYKCAQCGKGFNETKSLHNHILLHTGKKPYTCEYCGIAFRRKDSRDQHHRKHTGEQPYKCQDCDETFSSTNNRSKHRKQVHEKRDCQICPDCGDECIGQQQIRIHLNMHLGEKLKKLEES

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01199615;
90% Identity: iTF_01474181;
80% Identity: -