Basic Information

Insect: Hartigia nigra
Gene Symbol: -
Assembly: GCA_031001745.1
Location: JARPRG010000332.1:1323561-1325426[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 0.16 11 6.8 0.5 2 23 89 110 88 110 0.94

2 14 0.0085 0.56 10.8 0.6 1 23 118 141 118 141 0.92

3 14 0.00021 0.014 15.8 1.3 1 22 147 168 147 171 0.91

4 14 0.0073 0.48 11.0 0.7 1 23 284 307 284 307 0.90

5 14 0.00014 0.0091 16.4 1.6 1 23 313 335 313 335 0.97

6 14 0.00093 0.062 13.8 1.7 1 23 341 363 341 363 0.98

7 14 5.9e-06 0.00039 20.7 1.8 1 23 369 391 369 391 0.98

8 14 0.018 1.2 9.7 0.3 1 23 404 427 404 427 0.95

9 14 0.0001 0.0067 16.8 4.0 1 23 443 466 443 466 0.97

10 14 0.00025 0.017 15.6 0.5 1 23 474 497 474 497 0.97

11 14 0.00015 0.0099 16.3 1.4 1 23 503 525 503 525 0.98

12 14 0.00014 0.0094 16.4 3.5 1 23 531 553 531 553 0.98

13 14 0.0013 0.087 13.3 5.2 1 23 559 582 559 582 0.98

14 14 0.0055 0.37 11.4 0.1 3 23 590 610 588 610 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	0.16	11	6.8	0.5	2	23	89	110	88	110	0.94
2	14	0.0085	0.56	10.8	0.6	1	23	118	141	118	141	0.92
3	14	0.00021	0.014	15.8	1.3	1	22	147	168	147	171	0.91
4	14	0.0073	0.48	11.0	0.7	1	23	284	307	284	307	0.90
5	14	0.00014	0.0091	16.4	1.6	1	23	313	335	313	335	0.97
6	14	0.00093	0.062	13.8	1.7	1	23	341	363	341	363	0.98
7	14	5.9e-06	0.00039	20.7	1.8	1	23	369	391	369	391	0.98
8	14	0.018	1.2	9.7	0.3	1	23	404	427	404	427	0.95
9	14	0.0001	0.0067	16.8	4.0	1	23	443	466	443	466	0.97
10	14	0.00025	0.017	15.6	0.5	1	23	474	497	474	497	0.97
11	14	0.00015	0.0099	16.3	1.4	1	23	503	525	503	525	0.98
12	14	0.00014	0.0094	16.4	3.5	1	23	531	553	531	553	0.98
13	14	0.0013	0.087	13.3	5.2	1	23	559	582	559	582	0.98
14	14	0.0055	0.37	11.4	0.1	3	23	590	610	588	610	0.97

Sequence Information

Coding Sequence: ATGCAAGCAAATACACCAGAcctaataaaaacagaattaattgattataaaacAGATGATTggtcattaaatttaaaacaagAATCCATGCAAAAGCTAACAACAACTGAATCATCATGTAGCAACAAGGACTGGTTGGAGTACGATGTTTGCAAATTAGAAGATGATTTAAGTGATTGCTTGGATCAATTCCAAGAAGTACCATCTCACCAGATCAGCCTCAAATTATCAGATAGTTATGGAGATGAAATTAATCCTAAAATAACATGTACCCTTTGTGGGGCACGGTACACTTCACaattaaaatacgaatttcacaTGGAGAGACATAAATGTGGCAGAATTGATCTTTTCGTTTGTCCATTATGCCAAAAGAAATCCACGAGTGAGAACTTATTATGGGATCATTATTTCTACCTCCACAAAAATACACAACGTTACGTTTGTATGACTTGTGGAAAACTATTTCCAAAACAATCGAAATTAAAGAATCACCAAGACAGATATAGCCATTCTGGTATAAGTGAGATACACATTGATACAGATGAAAATGGTATAACTATTGATAATACAACACTCAGAAAAGTCATAGCCAAAAACGTACAAGGTATGCAAACAGGAAAATGTACATTATGTGAAAAAGAAGTTACTGATCTTGATCCTAATGCAATCAATGATGCTATAACTTGCTCCACATGTGAAGGGTCAGATCTTTCTCTAAAAGTTGATCCAGATGGAACAAAAGTAATATCACGAAGACAATATCATTGTTTAAAATGCTCAAAGCATTTTCTGCGAAAGGAAAGACTTGAGTTTCATGAGATGAGACACAATGAGGATATGAGTGAACATGTATGCAGTACTTGTGGGAAACAGTTCAGTGCCGAAAATGCCTTATATGAGCATTACCTCTTTGTACACAAAGGTGCAAGACCTCACATTTGTGAACTATGTGGAAAATCCTTCCAACTAAAAGCACGCCTCAAAGAGCATCTTCGAAGTCACACTGGAGAGCGACCCTATAAATGCGATGTATGTGATCAACGATGTATGACTGCAAATGCATTAAAACTTcataagaaaatacattatgTTCACGAACGTTTCGTTTGTCAGATTTGTAACAAGACGTTCAGCAAAAAGCAGAATATGAACGAGCATTTAGAAAAGCATTGGAAGAATGACAAGAAAATAGTATCACAGCAGGCATTCACGTGTCGTATTTGTTCCGAAGAACTTCCCACGTTTCGCCTTCTGAAATCTCATATGATAGAGTCACATGAAATTGATAGTCAAGACCCAATATTAATAGAGCAGAAACCGTGGTATAAATGCCAGCAGTGTAATGAAAAGTTTAAACATCAGATGTCATTAAAAGTTCACAGAGAAAAAGTTCATCAGGGAAAGATCAATCCAATGTTTCGTTGTGACATCTGTGATGTcacttataaaattaaacaactGTTAGCAAATCATATTAAAAGTAAGCATGATGGTGAAAAGCGTTACAAGTGCGCTCAATGTGGCAAGGGATTTAATGAGACAAAGTCTTTACATAATCACATCTTGTTGCACACTGGTAAAAAACCATTTACGTGTGATTATTGCGGAATAGCGTTTAGAAGGAAAGATTCGCGCGATCAACATCACAGGAAACATACTGGTGAACAACCTTACAAATGTCAACATTGTGATGAGACATTTTCTTCGACTAATAGTCGATCAAAACATCGTAAGCGTGTACATGAAAAGAGAGATTGTCAAATTTGTCCTGATTGTGGCGAAGAATGCATTGGGCAGCAACAGATTCGTGTTCATTTAAATATGCATCTTGGTGAAAAGTTAAGAATGCTGGAAGAATCGTGA
Protein Sequence: MQANTPDLIKTELIDYKTDDWSLNLKQESMQKLTTTESSCSNKDWLEYDVCKLEDDLSDCLDQFQEVPSHQISLKLSDSYGDEINPKITCTLCGARYTSQLKYEFHMERHKCGRIDLFVCPLCQKKSTSENLLWDHYFYLHKNTQRYVCMTCGKLFPKQSKLKNHQDRYSHSGISEIHIDTDENGITIDNTTLRKVIAKNVQGMQTGKCTLCEKEVTDLDPNAINDAITCSTCEGSDLSLKVDPDGTKVISRRQYHCLKCSKHFLRKERLEFHEMRHNEDMSEHVCSTCGKQFSAENALYEHYLFVHKGARPHICELCGKSFQLKARLKEHLRSHTGERPYKCDVCDQRCMTANALKLHKKIHYVHERFVCQICNKTFSKKQNMNEHLEKHWKNDKKIVSQQAFTCRICSEELPTFRLLKSHMIESHEIDSQDPILIEQKPWYKCQQCNEKFKHQMSLKVHREKVHQGKINPMFRCDICDVTYKIKQLLANHIKSKHDGEKRYKCAQCGKGFNETKSLHNHILLHTGKKPFTCDYCGIAFRRKDSRDQHHRKHTGEQPYKCQHCDETFSSTNSRSKHRKRVHEKRDCQICPDCGEECIGQQQIRVHLNMHLGEKLRMLEES

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01199615;
90% Identity: iTF_01198876;
80% Identity: -