Basic Information

Insect: Trachelus iudaicus
Gene Symbol: -
Assembly: GCA_030142595.1
Location: JARQTH010000366.1:1268079-1270070[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 0.2 14 6.4 0.7 2 23 131 152 130 152 0.94

2 15 0.033 2.3 8.9 0.4 1 23 160 183 160 183 0.91

3 15 0.015 1 10.0 1.4 1 22 189 210 189 213 0.90

4 15 2.4 1.6e+02 3.0 0.1 2 12 250 260 250 262 0.84

5 15 0.022 1.5 9.4 0.7 1 23 326 349 326 349 0.88

6 15 0.00014 0.0098 16.3 1.6 1 23 355 377 355 377 0.97

7 15 0.028 1.9 9.1 2.1 1 23 383 405 383 405 0.98

8 15 6.2e-06 0.00042 20.6 1.8 1 23 411 433 411 433 0.98

9 15 0.062 4.3 8.0 3.5 1 23 446 469 446 469 0.94

10 15 5.8e-05 0.004 17.5 3.5 1 23 485 508 485 508 0.97

11 15 0.00029 0.02 15.3 1.3 1 23 516 539 516 539 0.97

12 15 0.00016 0.011 16.2 1.4 1 23 545 567 545 567 0.98

13 15 9.7e-05 0.0066 16.8 3.3 1 23 573 595 573 595 0.99

14 15 0.00018 0.012 16.0 2.4 1 23 601 624 601 624 0.96

15 15 0.24 17 6.1 0.2 3 23 632 652 630 652 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	0.2	14	6.4	0.7	2	23	131	152	130	152	0.94
2	15	0.033	2.3	8.9	0.4	1	23	160	183	160	183	0.91
3	15	0.015	1	10.0	1.4	1	22	189	210	189	213	0.90
4	15	2.4	1.6e+02	3.0	0.1	2	12	250	260	250	262	0.84
5	15	0.022	1.5	9.4	0.7	1	23	326	349	326	349	0.88
6	15	0.00014	0.0098	16.3	1.6	1	23	355	377	355	377	0.97
7	15	0.028	1.9	9.1	2.1	1	23	383	405	383	405	0.98
8	15	6.2e-06	0.00042	20.6	1.8	1	23	411	433	411	433	0.98
9	15	0.062	4.3	8.0	3.5	1	23	446	469	446	469	0.94
10	15	5.8e-05	0.004	17.5	3.5	1	23	485	508	485	508	0.97
11	15	0.00029	0.02	15.3	1.3	1	23	516	539	516	539	0.97
12	15	0.00016	0.011	16.2	1.4	1	23	545	567	545	567	0.98
13	15	9.7e-05	0.0066	16.8	3.3	1	23	573	595	573	595	0.99
14	15	0.00018	0.012	16.0	2.4	1	23	601	624	601	624	0.96
15	15	0.24	17	6.1	0.2	3	23	632	652	630	652	0.96

Sequence Information

Coding Sequence: ATGGAACCAAATATGGCAGATGAGATAAAACTTGCTTATGAGGTAGATGAGATAAAACCTGCTTATGAGACAGATGAGATTAAACCTGCTTATGAGGCAGATGAGATAAAACCTGCTTATGAGGCAGATGAGATAAAACTTGCTTATGAGGCAGATGAAATAAAACCTGCTTTTGAAGCAGATAATTGGTCATTAAATGTGAAACAAGAATCTATTGAAAAGCTAACACCAACTAAATCATTATGTAGCGATAATGATTGGTTGGCTGGCAAAGCTTGCAAAATAGAAGATGATTTAAGTGATTGCTTAGATCAATTCCAAGAAGTACCGTTTAATCAGATCACCATAAAGTTATCAGAAAGTTATGGAGAGGAAACTAATTCTAAAATGACATGTACTCTTTGTGGGGCACGATACACTTCacaattaaaatacgaatttcataTGGAGAGACATAAATTTGGAAGAATTGATCTTTTCATCTGTCCATTGTGTCAAAGGAAATCCACGAGTGAGAACTTACTATGGGATCATTATTTCTATATCCACAAGAATACGCAACGTTACATTTGTATGACTTGTGCTAAGCTATTTCCAAAACAATCGAAACTGAAAAATCACCAAGACAAGTATAACCATTCTGGTATAAACGAGATACACATTGAAACTGATGAAAATGgtataattattgacaataCAACTATTAGAAAAGCCATAGTCAAAGAGATACAAGGTATGCAAACAGGAAAATGTACATTATGTGGAAAAGAAGTTACAGATCTTGATCCTAATGCAATCAATGATGCTATAACTTGCACCATGTGTGAAGGATCAGATCTTTCTTTAATGGTTGATTCAGATGGAACAAAAGTAATATCACGAAGACAATATCATTGTTCAAAATGCACAAAGCATTTTTTACGAAAGGAAAGACTTGAATTTCACGAGATGAGACACAATGAGGACATGAGTAAACATATATGCAGTAGTTGTGGAAAGAAGTTCAGTGCTGAGAATGCCTTATATGAGCATTATATCTTTGTACACAAAGGCGCAAGACCCCATATTTGTGAACTTTGTGGAAAATCCTTTCAACTAAAAGCACGCCTCAAAGAACATCTTCGAAGCCATACTGGAGAGCGACCCTATAAATGTGATGCATGTGATCAACGATGTATGACTAcaaatgcattaaaaattcacaagaaaataCATTCTGTTCATGAACGCTTTGTTTGTCAGATTTGTAACAAGACGTTCAGCAAAAAGCAGAATATGAATGAGCATTTAGAAAAGCATTGGAAGTATGACAGGAAAATAGTGTTACAACAGGCATTCAAATGTCGTATTTGTTCTGAGAAGTTTCCCACGTTTCGCAGTTTAAAATGTCACATGATAGAGACGCATGAAATTGATAGTCAAGATCCAATATTAATGGAACAGAAACCTTGGTACAAATGCGAGCAGTGTAATGAGAAGTTTAAGCATCAAATGTCATTAAAAGTtcatagagaaaaaattcatcaaggAAAAGTCAATCCAATATTTCATTGTGACATATGTGATGctacttttaaaattaaacaacTGTTAGCAAACCATATTAAAAGTAAGCATGATGGTGAAAAACGTTACAAGTGCGCTCAATGTGGTAAGGGATTTAATGAGACAAAGTCTTTGCATAATCATATCTTACTGCATACTGGTAAGAAACCATACACGTGCGAGTATTGCGGAATAGCGTTTAGAAGGAAAGATTCACGAGATCAGCATCACAGAAAACATACCGGTGAACAACCTTACAAATGTCAAGATtgtgatgaaacattttcttcAACTAATAATCGATCAAAACATCGTAAACAAGTACATGAAAAGAGAGATTGTCAAATTTGTCCTGATTGTGGCGACGAATGCATTGGGCAGCAACAGATTCGTATTCACTTAAATATGCATCttggtgaaaaattaaaaaagctcGAAGAGTCGTGA
Protein Sequence: MEPNMADEIKLAYEVDEIKPAYETDEIKPAYEADEIKPAYEADEIKLAYEADEIKPAFEADNWSLNVKQESIEKLTPTKSLCSDNDWLAGKACKIEDDLSDCLDQFQEVPFNQITIKLSESYGEETNSKMTCTLCGARYTSQLKYEFHMERHKFGRIDLFICPLCQRKSTSENLLWDHYFYIHKNTQRYICMTCAKLFPKQSKLKNHQDKYNHSGINEIHIETDENGIIIDNTTIRKAIVKEIQGMQTGKCTLCGKEVTDLDPNAINDAITCTMCEGSDLSLMVDSDGTKVISRRQYHCSKCTKHFLRKERLEFHEMRHNEDMSKHICSSCGKKFSAENALYEHYIFVHKGARPHICELCGKSFQLKARLKEHLRSHTGERPYKCDACDQRCMTTNALKIHKKIHSVHERFVCQICNKTFSKKQNMNEHLEKHWKYDRKIVLQQAFKCRICSEKFPTFRSLKCHMIETHEIDSQDPILMEQKPWYKCEQCNEKFKHQMSLKVHREKIHQGKVNPIFHCDICDATFKIKQLLANHIKSKHDGEKRYKCAQCGKGFNETKSLHNHILLHTGKKPYTCEYCGIAFRRKDSRDQHHRKHTGEQPYKCQDCDETFSSTNNRSKHRKQVHEKRDCQICPDCGDECIGQQQIRIHLNMHLGEKLKKLEES

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01199615;
90% Identity: iTF_01474181;
80% Identity: -