Tsti007156.1
Basic Information
- Insect
- Trachelus stipa
- Gene Symbol
- -
- Assembly
- GCA_036026315.1
- Location
- JAYRCB010000409.1:1168174-1170252[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 1.4 1.3e+02 3.9 1.9 2 23 160 181 159 181 0.92 2 15 0.037 3.6 8.8 0.4 1 23 189 212 189 212 0.91 3 15 0.00048 0.047 14.7 1.4 1 22 218 239 218 242 0.90 4 15 2.6 2.5e+02 3.0 0.1 2 12 279 289 279 291 0.84 5 15 0.025 2.4 9.3 0.7 1 23 355 378 355 378 0.88 6 15 0.00016 0.015 16.2 1.6 1 23 384 406 384 406 0.97 7 15 0.07 6.8 7.9 2.9 1 23 412 434 412 434 0.98 8 15 6.8e-06 0.00066 20.5 1.8 1 23 440 462 440 462 0.98 9 15 0.069 6.7 7.9 3.5 1 23 475 498 475 498 0.94 10 15 0.00017 0.016 16.2 3.4 1 23 514 537 514 537 0.97 11 15 0.00032 0.031 15.3 1.3 1 23 545 568 545 568 0.97 12 15 0.00017 0.017 16.1 1.4 1 23 574 596 574 596 0.98 13 15 0.00011 0.01 16.8 3.3 1 23 602 624 602 624 0.99 14 15 0.0002 0.019 15.9 2.4 1 23 630 653 630 653 0.96 15 15 0.27 26 6.1 0.2 3 23 661 681 659 681 0.96
Sequence Information
- Coding Sequence
- atgaaaacaaagataaaagagGGTAAAGTTGATATGGAAGCAAATATGGCAGATGTGATAAAACCTGCTTTTGAGACAGATGAGATAAAACCTGCTTATGAGGCAGATGAGATGAAACTTGCTTATGATGCAGATGAAATAAAACCTGCTTATGAGGCAGATGAGATAAAACTTGCTTATGAGGCACATGAGATACAACCTGCTTATGAGGCAGATGAGATAAAACCTGTTTATGAGGCAGATGAGATAAAACCTGTTTATGAGGCAGATAATTGGTTATTAAATGTGAAACAAGAACCTATTGAAAAGCTAACACCAACTAAATCGTTATGTAGCAATAAGGAATGGTTGGCTGACAAAGCTTGCAAAATAGAAGATGATTTAAGTGATTGTTTAGATCAATTCCAAGAAGTACCGTTTAATCAGATCAGCATAAAGTTATCAGAAAGTTATGGAGAGGAAACTAATTCTAAAATGACATGCACTCTTTGTGGAGCACGATATACTTCACATTTAAAGTACGAATTTCATATGGAAAGACATAAATTTGGAAGAATTGATCTTTTCATCTGTCCCTTGTGTCAAAGGAAATCCACAAGTGAGAACTTACTATGGGATCATTATTTCTATATCCACAAGAATACACAACGTTACATTTGTATGACTTGTGGTAAGCTATTTCCAAAACAATCGAAACTGAAAAATCACCAAGACAAGTATAACCATTCTGGTATAAACGAGATACACATTGAAACTGATGAAAATGGTATAACTATTGACAATACAACTATTAGAAAAGCCATAGTCAAAGAGATACAAGGTATGCAAACAGGAAAATGTACATTATGTGGAAAAGAAGTTACAGATCTTGATCCTAATGCAATCAATGATGCTATAACTTGCACAATGTGTGAAGGATCAGATCTTTCTTTAATGGTTGATTCAGATGGAACAAAAGTAATATCACGAAGACAATATCATTGTTCAAAATGCACAAAGCATTTTCTACGAAAAGAAAGACTTGAATTTCACGAGATGAGACACAACGAGGACATGAGTAAACATATATGCAGTAGTTGTGGAAAGAAGTTCAGTGCTGAGAACGCCTTATATGAGCATTATATCTTTGTACACAAAGGTGCAAGACCCCATATCTGTGAACTATGTGGAAAATCTTTCCAACTAAAAGCACGCCTCAAAGAACATCTTCGAAGCCATACTGGAGAGCGACCCTATAAATGTGATTCATGTGAGCAACGATGTATGACTAcaaatgcattgaaaattcacaagAAAATACATTCTGCTCATGAACGCTTTGTTTGTCAGATTTGTAACAAGACGTTCAGCAAAAAGCAGAATATGAATGAGCATTTAGAAAAGCATTGGAAGTATGacagaaaaatagtattacAACAGGCGTTCAAATGTCGTATTTGTTCTGAGAAGTTTCCCACGTTTCGCAGTTTAAAATGTCACATGATAGAGACGCATGAAATTGATAGTCAAGATCCAATATTAATGGAGCAGAAACCTTGGTACAAATGTGAGCAGTGTAGTGAGAAGTTTAAGCATCAAATGTCATTAAAAGTTCATAgggaaaaaattcatcaaggAAAAGTCAATCCAATATTTCATTGTGACATATGTGATgctacttttaaaattaaacagctGTTAGCAAACCATATTAAAAGTAAGCATGATGGTGAAAAACGTTACAAGTGCGCTCAATGTGGCAAGGGATTTAATGAGACAAAGTCTTTGCATAATCATATCTTACTGCATACTGGTAAGAAACCATACACGTGCGAGTATTGCGGGATAGCGTTTAGAAGGAAAGATTCACGAGATCAGCATCACAGGAAACATACCGGTGAGCAACCTTACAAATGTCAAGATTGTGATGAGACATTTTCTTCAACTAATAATCGATCAAAACATCGTAAACAAGTACATGAAAAGAGAGATTGTCAAATTTGTCCTGACTGTGGCGACGAATGCATTGGGCAGCAACAGATTCGTATTCACTTAAATATGCATCttggtgaaaaattaaaaaaactcgaAGAGTCGTGA
- Protein Sequence
- MKTKIKEGKVDMEANMADVIKPAFETDEIKPAYEADEMKLAYDADEIKPAYEADEIKLAYEAHEIQPAYEADEIKPVYEADEIKPVYEADNWLLNVKQEPIEKLTPTKSLCSNKEWLADKACKIEDDLSDCLDQFQEVPFNQISIKLSESYGEETNSKMTCTLCGARYTSHLKYEFHMERHKFGRIDLFICPLCQRKSTSENLLWDHYFYIHKNTQRYICMTCGKLFPKQSKLKNHQDKYNHSGINEIHIETDENGITIDNTTIRKAIVKEIQGMQTGKCTLCGKEVTDLDPNAINDAITCTMCEGSDLSLMVDSDGTKVISRRQYHCSKCTKHFLRKERLEFHEMRHNEDMSKHICSSCGKKFSAENALYEHYIFVHKGARPHICELCGKSFQLKARLKEHLRSHTGERPYKCDSCEQRCMTTNALKIHKKIHSAHERFVCQICNKTFSKKQNMNEHLEKHWKYDRKIVLQQAFKCRICSEKFPTFRSLKCHMIETHEIDSQDPILMEQKPWYKCEQCSEKFKHQMSLKVHREKIHQGKVNPIFHCDICDATFKIKQLLANHIKSKHDGEKRYKCAQCGKGFNETKSLHNHILLHTGKKPYTCEYCGIAFRRKDSRDQHHRKHTGEQPYKCQDCDETFSSTNNRSKHRKQVHEKRDCQICPDCGDECIGQQQIRIHLNMHLGEKLKKLEES
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01199615;
- 90% Identity
- iTF_00255329; iTF_01474949; iTF_00293958; iTF_00252297; iTF_00294729; iTF_00298569; iTF_00253066; iTF_01473418; iTF_00297035; iTF_00254573; iTF_00297806; iTF_00295506; iTF_00296275; iTF_00293204; iTF_01395322; iTF_01475708; iTF_00291774; iTF_00253823;
- 80% Identity
- -