Basic Information

Insect: Trachelus tabidus
Gene Symbol: -
Assembly: GCA_030142655.1
Location: JARQTI010000469.1:1287808-1289832[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 0.22 19 6.4 0.7 2 23 142 163 141 163 0.94

2 15 0.036 3.1 8.8 0.4 1 23 171 194 171 194 0.91

3 15 0.02 1.7 9.6 1.6 1 22 200 221 200 224 0.90

4 15 2.6 2.2e+02 3.0 0.1 2 12 261 271 261 273 0.84

5 15 0.024 2.1 9.4 0.7 1 23 337 360 337 360 0.88

6 15 0.00015 0.013 16.3 1.6 1 23 366 388 366 388 0.97

7 15 0.02 1.7 9.6 3.0 1 23 394 416 394 416 0.98

8 15 5.6e-06 0.00048 20.8 1.7 1 23 422 444 422 444 0.98

9 15 0.067 5.8 8.0 3.5 1 23 457 480 457 480 0.94

10 15 6.2e-05 0.0054 17.5 3.5 1 23 496 519 496 519 0.97

11 15 0.00056 0.048 14.5 1.3 1 23 527 550 527 550 0.97

12 15 0.00017 0.014 16.2 1.4 1 23 556 578 556 578 0.98

13 15 0.00011 0.0094 16.8 3.3 1 23 584 606 584 606 0.99

14 15 0.0002 0.017 16.0 2.4 1 23 612 635 612 635 0.96

15 15 0.26 23 6.1 0.2 3 23 643 663 641 663 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	0.22	19	6.4	0.7	2	23	142	163	141	163	0.94
2	15	0.036	3.1	8.8	0.4	1	23	171	194	171	194	0.91
3	15	0.02	1.7	9.6	1.6	1	22	200	221	200	224	0.90
4	15	2.6	2.2e+02	3.0	0.1	2	12	261	271	261	273	0.84
5	15	0.024	2.1	9.4	0.7	1	23	337	360	337	360	0.88
6	15	0.00015	0.013	16.3	1.6	1	23	366	388	366	388	0.97
7	15	0.02	1.7	9.6	3.0	1	23	394	416	394	416	0.98
8	15	5.6e-06	0.00048	20.8	1.7	1	23	422	444	422	444	0.98
9	15	0.067	5.8	8.0	3.5	1	23	457	480	457	480	0.94
10	15	6.2e-05	0.0054	17.5	3.5	1	23	496	519	496	519	0.97
11	15	0.00056	0.048	14.5	1.3	1	23	527	550	527	550	0.97
12	15	0.00017	0.014	16.2	1.4	1	23	556	578	556	578	0.98
13	15	0.00011	0.0094	16.8	3.3	1	23	584	606	584	606	0.99
14	15	0.0002	0.017	16.0	2.4	1	23	612	635	612	635	0.96
15	15	0.26	23	6.1	0.2	3	23	643	663	641	663	0.96

Sequence Information

Coding Sequence: atgaaaacaAAGACAAAAGAGGATAAAGTTGATATGGAACCAAATATGGCAGATGAGATAAAATCTGCTTATGAGGCAGATGAAATAAAACCTGCTTATGAGGGAGATGAGATAAAACCTGCTTATGAGGCAGATGAGATGAAACCTGCTTATGAGGCAGATGAGATAAAACCTGCTTATGTGGTAGATGAGATAAAACCTGCTTATGAAGCAGATAATTGGTCATTAAATGTGAAACAAGAATCTTTTGAAAAGCTAACGCCAACTAAATCGTTATGTAGCAATAATGATTGGTTGGCTGGCAAAGTTTGCAAAATAGAAGATGATTTAAGTGATTGTTTAGATCAATTCCAAGAAGTACCATTTAATCAGATCAGCATAAAGTTATCAGAAAGTTATGGAGAGGAAACTAATTCTAAAATGACATGTACTCTTTGTGGGGCACGATATACTTCAcaattaaaatacgaatttcataTGGAGAGACATAAATTTGGAAGAATTGATCTTTTCATATGTCCATTGTGTCAAAGGAAATCCACGAGTGAGAACTTACTGTGGGATCATTATTTCTATATCCACAAGAATACGCAACGTTACATTTGTATGACTTGTGCTAAGCTATTTCCAAAACAATCGAAACTGAAGAATCACCAAGACAAGTATAAACATTCTGGTATAAACGAGGTACACATTGAAACTGACGAAAATGGTATAACTATTGACAATACAACTATTAGAAAAGCCATAGTCAAAGAGATACAAGGTATGCAAACAGGAAAATGTACATTATGTGGAAAAGAAGTTACAGATCTTGATCCTAATGCAATCAATGATGCTATAACTTGCACCATGTGTGAAGGATCAGATCTTTCTTTAATGGTTGATTCAGATGGAACAAAAGTAATATCACGAAGACAATATCATTGTTCAAAATGCACAAAGCATTTTTTACGAAAGGAAAGACTTGAATTTCACGAGATGAGACACAATGAGGACATGAGTAAACATATATGCAGTAGTTGTGGAAAGAAGTTCAGTGCTGAGAATGCCTTATATGAGCATTATATCTTTGTACACAAAGGTGCAAGACCCCATATTTGTGAACTTTGTGGAAAATCCTTTCAACTAAAAGCACGCCTCAAAGAACATCTTCGAAGCCATACTGGAGAGCGACCCTATAAATGTGATTCATGTGATCAACGATGTATGACTACAaatgcattaaaaattcacaagaAAATACATTCTGTTCATGAACGTTTTGTTTGCCAGATTTGTAACAAGTCGTTCAGCAAAAAGCAGAATATGAATGAGCATTTAGAAAAGCATTGGAAGTATGACAGGAAAATAGTATTACAACAGGCATTCAAATGTCGTATTTGTTCTGAGAAGTTTCCCACGTTTCGCAGTTTAAAATGTCACATGATAGAGACGCATGAAATTGATAGTCAAGATCCAATATTAATGGAGCAGAAACCTTGGTACAAATGCGAGCAGTGTAATGAGAAGTTTAAGCATCAAATGTCATTAAAAGttcatagagaaaaaattcatcaaggAAAAGTCAatccaatatttcattgtgACGTATGTGATGctacttttaaaattaaacaactGTTAGCAAACCATATTAAAAGTAAGCATGATGGTGAGAAACGTTACAAGTGCGCTCAATGTGGCAAGGGATTTAATGAGACAAAGTCTTTGCATAATCATATCTTACTGCATACTGGTAAGAAACCATACACGTGCGATTACTGCGGAATAGCGTTTAGAAGGAAAGATTCACGAGATCAGCATCATAGGAAACATACTGGTGAGCAACCTTACAAATGTCAAGATTGTGATGAGACATTTTCTTCAACTAATAATCGATCAAAACATCGTAAACAAGTACATGAAAAGAGAGATTGTCAAATTTGTCCTGATTGTGGTGACGAATGCATTGGGCAGCAACAGATTCGTATTCACTTAAATATGCATCttggtgaaaaattaaaaaagctcGAAGAGTCGTGA
Protein Sequence: MKTKTKEDKVDMEPNMADEIKSAYEADEIKPAYEGDEIKPAYEADEMKPAYEADEIKPAYVVDEIKPAYEADNWSLNVKQESFEKLTPTKSLCSNNDWLAGKVCKIEDDLSDCLDQFQEVPFNQISIKLSESYGEETNSKMTCTLCGARYTSQLKYEFHMERHKFGRIDLFICPLCQRKSTSENLLWDHYFYIHKNTQRYICMTCAKLFPKQSKLKNHQDKYKHSGINEVHIETDENGITIDNTTIRKAIVKEIQGMQTGKCTLCGKEVTDLDPNAINDAITCTMCEGSDLSLMVDSDGTKVISRRQYHCSKCTKHFLRKERLEFHEMRHNEDMSKHICSSCGKKFSAENALYEHYIFVHKGARPHICELCGKSFQLKARLKEHLRSHTGERPYKCDSCDQRCMTTNALKIHKKIHSVHERFVCQICNKSFSKKQNMNEHLEKHWKYDRKIVLQQAFKCRICSEKFPTFRSLKCHMIETHEIDSQDPILMEQKPWYKCEQCNEKFKHQMSLKVHREKIHQGKVNPIFHCDVCDATFKIKQLLANHIKSKHDGEKRYKCAQCGKGFNETKSLHNHILLHTGKKPYTCDYCGIAFRRKDSRDQHHRKHTGEQPYKCQDCDETFSSTNNRSKHRKQVHEKRDCQICPDCGDECIGQQQIRIHLNMHLGEKLKKLEES

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01199615;
90% Identity: iTF_01474181;
80% Identity: -