Fase002614.2


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Formica aserva
Gene Symbol
bab2
Assembly
GCA_037039905.1
Location
JAXRKO010000002.1:2993094-2996859[+]

Transcription Factor Domain

TF Family
HTH
Domain
HTH_psq domain
PFAM
PF05225
TF Group
Helix-turn-helix
Description
This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 1 2e-16 5.6e-13 49.8 0.0 2 42 380 421 379 434 0.95

Sequence Information

Coding Sequence
ATGATGTCTATGCAACAGTACTGTTTGCGGTGGAACAATCATCAGCCGAACTTCATCTCAGTTTTCTCCAACTTACTAAATAATGAGACTCTAGTGGATGTTACTCTTGCTGCAGAAGGCAGGCAAATTCAGGCTCACAAAGTTGTACTGTCAGCATGCAGTACATATTTTCAGTCGCTCTTTACGGTGAATCCTTGTCAGCACCCTATCGTTATACTTAAGGACATCAAGTTTTCGGACCTCAAGATTATGGTAGACTTTATGTACTATGGAGAAGTAAACATATCTCAAGATCAATTACCGTCTATCATAAagACGGCAGAAAGCTTAAAGATAAAAGGACTTGCAGAAATGCATACAGCGTCATTAACTAAATGGCCAAGTGGAAGTAGCGAAACAGGTGGAGGGGACCGTGGCGAATCCTGCTCACCCAGTCCATCTCCATTGTCTCCTTCTTTTCGTAGAAAAAGGTTACGAAAGTCTTCTACTGGCTCAACCTCTGGTTCTGGCGACAGGCCGGAAGAAATCAATGAAATAACACTAGTGGCTACTAACATTGTAAAACCTGAACCCCTAATTGCATCGCAAGAAAGTGGAGAGAATATAAGGCGACCAGTAAATACCAGCACAGAATCCCAAGGCAGTATCGATGAAGATCAAATATCAATTATGAGTAATATGGAAACTAGTTCTACCAATACACCAGCCCAAAGTGATGGTTCTATTCAAGATGTAAGTCAACAGTCGACAGGAGGAAACATTGCACAAAGTTCTGTCTCTTCACAACCACCCTCTCATCAAGGATTACAATGGACTATTATGGAGCACACATATCATCCGACACGTTTCGCTCTGTCCTCGTGTCAAACGAATCTGTCGATCCAAGCGTCATCGGCGTTCACGACGCCCGAAATAACAGCATCCTCGACCATCAGCGATCAGTACTCTGGTACCAGCACGACTGGTTCCAGTTGCGCCCTGACGAACTATCCAAACTCCTCTCACGGGACATTGCAGCATGCGTCGTCATCGTCGGGCGGCCCCTCGCCATCGGCGCAGTGTCTGAGTAACTGCCAGAGTCCGTGCGCCAGCCCGCAGACTGCGATTAAGAGGAAACGATCGACTAATCCGCAAGCGGATGAGAACTTTATACGCGCGCTCGACGCCGTACGTTATGGCGGCATAGGGTTTTGCAAGGCGGCGAGGATGTACGGCGTGAACAACCGAACACTCTGGCTCGAGTACAAGAAGCGCGGCTACCCGAACAATCGGCCCAGTCTCAAGTCTCGCGTTAAGCAAGAAGTTAACTCctcgccgccgccaccgccgcagTCGCAAGCGCCTCCGGCGCAACCCATGAACTCATCGCAGAGCCCGACTCCCATGGGCCCGCCCACGACTCCGCACAGCACGCACAACACACATAGCACGCACACCATGCTGACCAGTCACAGTCCCCACACGATGCTGAGCGGTTACATTGACAGGCATACGGACTATGGTGCGCTACCGAGCACCACGATGCCGATCAATCTGCACGGCGTCAACTACAACGCCATGTGA
Protein Sequence
MMSMQQYCLRWNNHQPNFISVFSNLLNNETLVDVTLAAEGRQIQAHKVVLSACSTYFQSLFTVNPCQHPIVILKDIKFSDLKIMVDFMYYGEVNISQDQLPSIIKTAESLKIKGLAEMHTASLTKWPSGSSETGGGDRGESCSPSPSPLSPSFRRKRLRKSSTGSTSGSGDRPEEINEITLVATNIVKPEPLIASQESGENIRRPVNTSTESQGSIDEDQISIMSNMETSSTNTPAQSDGSIQDVSQQSTGGNIAQSSVSSQPPSHQGLQWTIMEHTYHPTRFALSSCQTNLSIQASSAFTTPEITASSTISDQYSGTSTTGSSCALTNYPNSSHGTLQHASSSSGGPSPSAQCLSNCQSPCASPQTAIKRKRSTNPQADENFIRALDAVRYGGIGFCKAARMYGVNNRTLWLEYKKRGYPNNRPSLKSRVKQEVNSSPPPPPQSQAPPAQPMNSSQSPTPMGPPTTPHSTHNTHSTHTMLTSHSPHTMLSGYIDRHTDYGALPSTTMPINLHGVNYNAM

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00125828; iTF_00884993; iTF_00127363; iTF_01269891; iTF_01423015; iTF_00128104; iTF_00182696; iTF_01405608; iTF_00129098; iTF_01267467; iTF_01268939; iTF_01271115; iTF_00126828; iTF_01267660; iTF_00128333; iTF_01269709; iTF_00016113; iTF_01354706; iTF_00128883; iTF_01409299; iTF_01422835; iTF_00182548; iTF_00765460; iTF_00014645; iTF_01271318; iTF_01407158; iTF_01408986; iTF_00126619; iTF_00014813; iTF_00015965; iTF_01269149; iTF_00127582; iTF_01354526; iTF_00126080; iTF_00084449; iTF_00086402; iTF_00084646; iTF_00086094; iTF_00087855; iTF_00087024; iTF_00087281; iTF_00085205; iTF_00085493; iTF_00088917; iTF_00088701; iTF_00088126; iTF_00217153; iTF_00219716; iTF_00225156; iTF_00231236; iTF_00231397; iTF_00219878; iTF_00228582; iTF_00225319; iTF_00222441; iTF_00227881; iTF_00215628; iTF_00215788; iTF_00218508; iTF_00222605; iTF_00226514; iTF_00228050; iTF_00220500; iTF_00226676; iTF_00228756; iTF_00219031; iTF_00220663; iTF_00227353; iTF_00227195; iTF_00219196; iTF_00229948; iTF_00221182; iTF_00221342; iTF_00230110; iTF_00214943; iTF_00215103; iTF_00216992; iTF_00218336; iTF_00996449; iTF_01560359; iTF_01560553; iTF_00997134; iTF_00996951; iTF_00996255; iTF_00360132; iTF_00360296; iTF_00360986; iTF_00360828; iTF_00860484; iTF_00861796; iTF_00862661; iTF_00762471; iTF_00861256; iTF_00762636; iTF_00860302; iTF_00864558; iTF_00763313; iTF_00862481; iTF_00763154; iTF_00864727; iTF_00863192; iTF_00863353; iTF_00861978; iTF_00861051; iTF_00024700; iTF_00024541; iTF_00217669; iTF_00217826; iTF_00183206; iTF_00183364; iTF_01065478; iTF_01066342; iTF_01069574; iTF_01070279; iTF_01067691; iTF_01068204; iTF_01070444; iTF_01066862; iTF_01067022; iTF_01067534; iTF_01066163; iTF_01065652; iTF_01069749; iTF_01068376; iTF_01068893; iTF_01069056; iTF_00225996; iTF_00225832; iTF_00633550; iTF_00391213; iTF_00391420; iTF_00633724; iTF_00303185; iTF_00302948; iTF_01122354; iTF_00865235; iTF_00865414; iTF_01408084; iTF_00183863; iTF_00184020; iTF_00983672; iTF_00983536; iTF_00229273; iTF_00229430; iTF_00452027; iTF_00451851; iTF_00140668; iTF_00140505; iTF_00216476; iTF_00216307; iTF_00233310; iTF_00233148; iTF_01424286; iTF_01424456; iTF_00117919; iTF_00118089; iTF_01169087; iTF_01169259; iTF_00962592; iTF_00962425; iTF_00868685; iTF_00279883; iTF_00868205; iTF_00280048; iTF_00280660; iTF_00280539; iTF_00868031; iTF_01245138; iTF_00867539; iTF_00867312; iTF_01254711;
90% Identity
iTF_01354526;
80% Identity
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