Atex019530.1
Basic Information
- Insect
- Atta texana
- Gene Symbol
- bab2
- Assembly
- GCA_004480015.1
- Location
- QEPB01038784.1:4923-8930[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 2.3e-16 7.5e-13 48.5 0.0 2 42 376 417 375 430 0.95 2 2 1.7 5.4e+03 -2.3 0.0 25 32 501 508 500 509 0.86
Sequence Information
- Coding Sequence
- ATGTCTATGCAACAATTCTGTTTGCGATGGAACAATCATCAACCGAATTTCATCTCAGTTTTTTCCAATTTGTTGAATAATGAGACTCTAGTGGATGTCACTCTCGCTGCTGAAGGCAGGCAGATTCAGGCTCATAAAGTCGTACTGTCAGCATGCAGCACATACTTTCAGTCACTATTCACAGTGAATCCTTGTCAGCATCCTATTGTCATACTCAAAGATATCAAGTTTTCCGACCTCAAGATTATGGTggattttatgtattatggaGAAGTGAATATATCTCAAGAGCAATTACCATCCATCATAaagacGGCGGAGAGCTTAAAGATAAAGGGACTTGCAGAAATGCATACAGCGTCATTAACTAAATGGCCAAGTGGAAGCAGCGAAACAGGTGGAGGGGATCGCGGCGAATCCTGCTCGCCAAGTCCTTCTCCATTATCTCCTTCTTTTCGCAGAAAAAGGTTAAGAAAGTCTTCAACTGGTTCAACGTCTGGTTCAGGTGACAAACCAgaagaaatgaatgaaatcaCATTAGTGGCTACTAACATTGTCAAACCTGAACCCCTCATTGTATCGCAAGAGAGTGGAGAGAATTTGAGGCGACCAGTAAACACCAGCACAGAATCTCAAGGCAGTATTGACGAAGATCAAATATcaattatgaGTAATATGGAAACTAGTTCTGCTAATACGCCAGCCCAAAGTGACGGTTCTATTCAAGATGTAAGTCAACAATCGGCAGGAAACATTGGACAAAGTTCTGTATCTTCGCAACCACCTGTTCATCAAGGATTACAATGGACTATTATGGAGCACACATATCATCCGACACGTTTCGCTCTGTCCTCGTGTCAAACGAATCTGTCGATCCAAGCGTCGTCGGCATTTACGACGCCCGAAATAACAGCATCTTCGACCATCAGCGATCAGTACTCTGGTACCAGCACGACTGGTTCCAGTTGCGCCCTGACGAACTATCCGAACTCCTCCCACGGGACGTTGCAGCACGCGTCGTCGGGTGGCCCCTCGCCATCGGCGCAGTGCCCAAGCAATTGCCAGAGCCCTTGCGCCAGCCCGCAGACTGCGATTAAGAGGAAGCGTTCGACTAATCCGCAGGCAGATGAGAATTTTATACGTGCGCTTGATGCCGTGCGTTACGGTGGTATAGGATTTTGCAAAGCGGCCAGGATGTTCGGCGTGAATAATCGAACGCTCTGGCTTGAGTACAAGAAACGCGGCTATCCGAACAATCGGCCCAGCCTCAAGTCCCGCGTTAAACAGGAGGTCAATTCCTCGCCGCCGCCGGCACCCCCGGCGCAGCCTATGAACTCGCAGAGCCCAACGCCTATGGGCCCGCCCACAACTCCACATAGCACACATAACACACATACTACGCACACTATGCTGACAAGCCACAGTCCCCACACGATGCTGAGTGGTTATATTGACAGGCATACAGACTATACGTTACCGAGCTCTACGATGCCGATTAATCTGCATGGCGTTAATTACAATACCATGTGA
- Protein Sequence
- MSMQQFCLRWNNHQPNFISVFSNLLNNETLVDVTLAAEGRQIQAHKVVLSACSTYFQSLFTVNPCQHPIVILKDIKFSDLKIMVDFMYYGEVNISQEQLPSIIKTAESLKIKGLAEMHTASLTKWPSGSSETGGGDRGESCSPSPSPLSPSFRRKRLRKSSTGSTSGSGDKPEEMNEITLVATNIVKPEPLIVSQESGENLRRPVNTSTESQGSIDEDQISIMSNMETSSANTPAQSDGSIQDVSQQSAGNIGQSSVSSQPPVHQGLQWTIMEHTYHPTRFALSSCQTNLSIQASSAFTTPEITASSTISDQYSGTSTTGSSCALTNYPNSSHGTLQHASSGGPSPSAQCPSNCQSPCASPQTAIKRKRSTNPQADENFIRALDAVRYGGIGFCKAARMFGVNNRTLWLEYKKRGYPNNRPSLKSRVKQEVNSSPPPAPPAQPMNSQSPTPMGPPTTPHSTHNTHTTHTMLTSHSPHTMLSGYIDRHTDYTLPSSTMPINLHGVNYNTM
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00729213;
- 90% Identity
- iTF_01354526;
- 80% Identity
- iTF_00182696;