Abic017381.1
Basic Information
- Insect
- Andrena bicolor
- Gene Symbol
- lola
- Assembly
- GCA_960531205.1
- Location
- OY482667.1:35070977-35074094[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 3.6e-14 2.5e-11 43.4 0.0 2 44 373 416 372 417 0.94
Sequence Information
- Coding Sequence
- ATGTCGATGCAGCAGTTCTGTTTGCGGTGGAACAATCATCAGCCAAACTTCATTTCGGTGTTCTCCAATCTGCTGAACAATGAGACACTGGTGGACGTGACGCTGGCCGCAGAGGGCAGGCACCTTCAAGCGCACAAAGTCGTGCTGTCCGCGTGCAGCACGTACTTCCAGTCGCTGTTCACCGTCAATCCTTGCCAGCATCCGATCGTTATACTGAAGGATGTGAAGTTCTCCGATCTGAAAATCATGGTCGACTTTATGTATTACGGCGAAGTGAACATATCGCAGGATCAGTTGCCGTCGATCATAAAGACCGCGGAGAGTTTAAAGATAAAGGGACTCGCCGAAATGCATACTGCTTCTTTGACCAAGTGGCCCAGTGGTAGTAGCGAGCCTGGAGGAGGGGATCGAGGCGATTCTTGCTCGCCAAGTCCGTCCCCGTTATCGCCGACCATCCGTGGGAAGAGGTTGAGGAAATCGTCGACGGGCTCAACATCTGGATCCGGTGATAAACCAgaagaaattaatgaaattacttTAGTCGCTACCAATATTGTAAAACCAGAACCATTGATAGTTTCGCAAGAAGGGGTGGAGAACTTAAGGAGACCTGTGAACACCAGTACAGAATCTCAGGGCAGTATCGACGAGGAACAGATATCAATTATGAGTAACATGGAGAATAGTTCTGCGACGCCGTCGCAAAGCGACGGTTCGATACAGGATGTGAGCCAGCAATCGGGAGGGAACGTGGCGCAGAGTTCAGTCTCTTCGCAACCACCTGCGCATCAAGGATTGCAATGGACTATTATGGAGCACACATATCCACGTTTCGCTCTGTCCTCGTGTCAAACGAATCTGTCGATCCAAGCGTCATCAGCTTTTACCACGCCCGAAATAACAGCCTCCTCGACCATCAGCGATCAGTACACTGGTACCAGCACGACTGGTTCCAGTTGCGCCCTGACCAGTTACCAGAACTCCTCGCACGGGACGTTGCAGCACTCGTCGTCCAGCGGGCCCACGCCGTCGGCACAGTGCCCCAGCAACTGCCAGACCCCGTGCGCCAGCCCCCAGACGGCGATCAGGAGGAAACGATCCACCAATCCCCAGTCGGACGAGAACTTCATCAGAGCTCTGGACGCGGTGCGGTTCGGCGGCGTAGGGTTCTGCAGGGCGGCGAAGATGTTCGGCGTGAACAATCGAACGCTGTGGCTGGAGTACAGGAAACGGGGTTACCCGGTCAACCGGCCGAGCTTGAAGTCAAGGGTGAAGCAGGAAGTGAATTCCTCGCCGCCGCCGGCACCGGCCGCGCAGCCGGTCAACTCGCAGAGCCCAACGCCGATGGGACCCCCCACCATACCGCACAGTACACACAATACCCACAGCACGCATACCATGCTGACCACCCACAGCCCTCACACGATGCTCAGCGGTTATATCGACAGCAGGCACACGGACTACGCGTTGCCCAGCACCACGATGCCAATCAATCTGCACGGCGTTAATTACAACGCAATGTGA
- Protein Sequence
- MSMQQFCLRWNNHQPNFISVFSNLLNNETLVDVTLAAEGRHLQAHKVVLSACSTYFQSLFTVNPCQHPIVILKDVKFSDLKIMVDFMYYGEVNISQDQLPSIIKTAESLKIKGLAEMHTASLTKWPSGSSEPGGGDRGDSCSPSPSPLSPTIRGKRLRKSSTGSTSGSGDKPEEINEITLVATNIVKPEPLIVSQEGVENLRRPVNTSTESQGSIDEEQISIMSNMENSSATPSQSDGSIQDVSQQSGGNVAQSSVSSQPPAHQGLQWTIMEHTYPRFALSSCQTNLSIQASSAFTTPEITASSTISDQYTGTSTTGSSCALTSYQNSSHGTLQHSSSSGPTPSAQCPSNCQTPCASPQTAIRRKRSTNPQSDENFIRALDAVRFGGVGFCRAAKMFGVNNRTLWLEYRKRGYPVNRPSLKSRVKQEVNSSPPPAPAAQPVNSQSPTPMGPPTIPHSTHNTHSTHTMLTTHSPHTMLSGYIDSRHTDYALPSTTMPINLHGVNYNAM
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00729213;
- 90% Identity
- iTF_01424286;
- 80% Identity
- iTF_00084646;