Chis013133.1
Basic Information
- Insect
- Cataglyphis hispanica
- Gene Symbol
- bab2
- Assembly
- GCA_004195275.1
- Location
- SGAY01004829.1:1220-4977[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 9.8e-17 3.3e-13 49.8 0.0 2 42 380 421 379 434 0.95
Sequence Information
- Coding Sequence
- ATGTCTATGCAACAGTACTGTTTGCGATGGAACAATCATCAACCGAACTTCATCTCGGTTTTCTCcaacttattaaataatgagacTCTAGTGGATGTTACTCTTGCTGCAGAAGGCAGACAAATTCAGGCTCACAAAGTTGTACTGTCAGCATGCAGTACATATTTTCAGTCGCTGTTTACAGTGAATCCTTGTCAGCACCCTATTGTTATACTTAAGGACATCAAGTTTTCGGACCTCAAGATCATGGTAGATTTTATGTACTATGGAGAAGTAAACATATCTCAAGATCAATTACCGTCTATcttaaagacGGCAGAAAGCTTAAAGATAAAAGGACTTGCAGAAATGCATACAGCATCAATAACTAAATGGCCAAGTGGAAGTAGCGAAACAGGTGGAGGGGATCGTGGCGAATCTTGCTCACCCAGTCCATCTCCATTATCTCCTTCTTTTCGTAGAAAAAGATTACGAAAGTCTTCTACTGGCTCAACGTCTGGTTCTGGCGACAGACCGGAAGAAATCAATGAAATAACACTAGTGGCTACTAATATTGTAAAACCTGAACCCCTAATTGCATCGCAAGAaagtgaagaaaatataaggCGACCAGTAAATACCAGCACAGAATCTCAAGGCAGTATTGATGAAGATCAAATATCAATTATGAGTAATATGGAAACTAGTTCCACCAATATACCAGCTCAGAGTGATGGTTCCATTCAAGATGTAAATCAACAATCGACAGGAGGAAACATTGGACAAAGTTCTGTCTCCTCACAACCACCTTCTCATCAAGGATTACAATGGACTATTATGGAGCACACATATCATCCGAGTCGTTTCGCTCTGTCCTCGTGTCAAACGAATCTGTCGATCCAAGCGTCGTCGGCGTTCACGACGCCCGAAATAACAGCAACCTCGACCATGAGCGATCAGTACTCTGGTACCAGCACGACTGGTTCCAGTTGCGCCTTGACGAACTATCCAAACTCCTCCCACGGAACGTTGCAGCAtgcgtcgtcatcgtcgtcgggCGGCCCCTCGTCATCGGCGCAGTGCCTGAGTAACTGCCAGAGCCCGTGCGCAAGCCCGCAGGCTGCGATTAAGAGGAAACGATCGACTAATCCACAAGCGGATGAGAACTTTATACGCGCGCTCGATGCTGTACGTTACGGCGGCATAGGATTTTGCAAGGCGGCGAGGATGTACGGCGTTAATAACCGAACACTCTGGCTCGAATACAAGAAGCGCGGCTACCCGAACAATCGGCCCAGTCTTAAGTCTCGCGTTAAGCAAGAAGTCAACTCCTCGCCGCCGCCACCATCGCCGTCGCAGGCGCCTCCGGTGCAACCCATAAATTCGTCGCAGAGCCCGACTCCCATGGGTCCGCCCACGACTCCGCACAGCACGCACAGCACACATAGCACGCACACCATGCTAACCAGTCACAGTCCCCACACGATGCTGACCGGTTACATTGACAGGCATACGGATTATGGTGCGATACCGAGCACCACGATGCCGATCAATCTGCACGGCGTCAACTACAACGCCATGTGA
- Protein Sequence
- MSMQQYCLRWNNHQPNFISVFSNLLNNETLVDVTLAAEGRQIQAHKVVLSACSTYFQSLFTVNPCQHPIVILKDIKFSDLKIMVDFMYYGEVNISQDQLPSILKTAESLKIKGLAEMHTASITKWPSGSSETGGGDRGESCSPSPSPLSPSFRRKRLRKSSTGSTSGSGDRPEEINEITLVATNIVKPEPLIASQESEENIRRPVNTSTESQGSIDEDQISIMSNMETSSTNIPAQSDGSIQDVNQQSTGGNIGQSSVSSQPPSHQGLQWTIMEHTYHPSRFALSSCQTNLSIQASSAFTTPEITATSTMSDQYSGTSTTGSSCALTNYPNSSHGTLQHASSSSSGGPSSSAQCLSNCQSPCASPQAAIKRKRSTNPQADENFIRALDAVRYGGIGFCKAARMYGVNNRTLWLEYKKRGYPNNRPSLKSRVKQEVNSSPPPPSPSQAPPVQPINSSQSPTPMGPPTTPHSTHSTHSTHTMLTSHSPHTMLTGYIDRHTDYGAIPSTTMPINLHGVNYNAM
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00729213;
- 90% Identity
- iTF_01354526;
- 80% Identity
- iTF_00280048;