Pcub015169.1
Basic Information
- Insect
- Pseudomyrmex cubaensis
- Gene Symbol
- bab2
- Assembly
- GCA_014825685.1
- Location
- QVOA01010301.1:16203-19905[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 8.5e-16 7e-13 48.5 0.0 2 42 376 417 375 430 0.95 2 2 6.1 5e+03 -2.3 0.0 25 32 503 510 502 511 0.86
Sequence Information
- Coding Sequence
- ATGTCTATGCAACAGTATTGTTTACGATGGAACAATCATCAGCCAAATTTCATCTCGGTTTTCTCCAATTTGCTGAACAATGAAACCTTGGTGGACGTTACCCTTGCTGCCGAGGGCAGGCAAATTCAGGCTCACAAAGTTGTACTGTCGGCGTGCAGTACATATTTTCAGTCGCTGTTCACAGTGAATCCCTGTCAGCATCCTATCGTTATACTTAAGGACATTAAGTATTCCGATCTGAAAATTATGGTGGACTTCATGTATTACGGAGAAGTGAACATATCACAGGATCAGTTGCCATCCATCATAAAGACTGCGGAGAGTTTAAAAATAAAGGGGCTCGCAGAAATGCACACAGCGTCATTGACCAAGTGGCCAAGCGGCAGCAGCGAAACCGGCGGAGGAGATCGTGGTGAATCTTGTTCACCCAGTCCGTCTCCATTGTCTCCCTCGTTTCGTAGAAAAAGATTAAGGAAATCTTCTACAGGTTCGACCTCTGGCTCAGGCGACAAACCGGAAGAGATTAACGAAATCACGTTAGTGGCCACCAACATTGTAAAACCCGAGCCTCTAATTGCCTCGCAAGAAAGTGGAGAAAATTTGAGGCGACCGGTGAATACCAGCACAGAATCTCAGGGCAGCATTGACGAAGATCAAATATCGATTATGAGTAATATGGAGACCAGTTCAGCCAACACGCCAGCTCAAAGCGACGGTTCTATTCAGGATGTAAGTCAACCGACCGGGGGAAATATCGGACAAGCAAGTTCCGTTTCTTCGCAACCACCAGTTCATCAAGGATTACAATGGACTATTATGGAGCACACATATCATCCACGTTTCGCTCTGTCCTCGTGTCAAACGAATCTGTCGATCCAAGCGTCGTCGGCGTTTACGACGCCCGAAATAACAGCATCCTCGACCATCAGCGATCAGTACTCTGGTACCAGCACGACTGGTTCCAGTTGCGCCTTGACGAACTATCCGAACTCCTCCCACGGGACGTTGCAACACTCGTCGTCGGGCGGACCCTCGCCATCGACGCAGTGCCCGAGTAACTGCCAGAGTCCTTGCGCCAGCCCGCAGACTGCGATTAAGAGGAAGCGCTCGACTAATCCACAGGCGGACGAGAACTTTATACGCGCGCTCGACGCCGTACGCTACGGCGGCATAGGGTTTTGCAAAGCGGCCAGGATGTTCGGCGTGAACAACCGAACGCTCTGGCTCGAGTATAAGAAGCGCGGCTACCCGAACAATCGGCCCAGTCTCAAGTCCCGCGTTAAGCAGGAGGTCAACTCCTCGCCGCCCCCGGCGCCACCGGCGGCGCAGCCCATGAACTCGCAGAGCCCGACACCGATGGGCCCGCCAACGACTCCGCACAGCACACACAATACTCACACCACCCACACCATGCTGACCAGTCACAGTCCTCACACGATGCTGAGCGGTTACATTGACAGCAGGCACACGGATTACTCATTGCCGAGTAGCACGATGCCGATCAATCTGCACGGCGTTAATTACAACACCATGTGA
- Protein Sequence
- MSMQQYCLRWNNHQPNFISVFSNLLNNETLVDVTLAAEGRQIQAHKVVLSACSTYFQSLFTVNPCQHPIVILKDIKYSDLKIMVDFMYYGEVNISQDQLPSIIKTAESLKIKGLAEMHTASLTKWPSGSSETGGGDRGESCSPSPSPLSPSFRRKRLRKSSTGSTSGSGDKPEEINEITLVATNIVKPEPLIASQESGENLRRPVNTSTESQGSIDEDQISIMSNMETSSANTPAQSDGSIQDVSQPTGGNIGQASSVSSQPPVHQGLQWTIMEHTYHPRFALSSCQTNLSIQASSAFTTPEITASSTISDQYSGTSTTGSSCALTNYPNSSHGTLQHSSSGGPSPSTQCPSNCQSPCASPQTAIKRKRSTNPQADENFIRALDAVRYGGIGFCKAARMFGVNNRTLWLEYKKRGYPNNRPSLKSRVKQEVNSSPPPAPPAAQPMNSQSPTPMGPPTTPHSTHNTHTTHTMLTSHSPHTMLSGYIDSRHTDYSLPSSTMPINLHGVNYNTM
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00729213;
- 90% Identity
- iTF_01354526;
- 80% Identity
- iTF_01268939; iTF_01267660; iTF_01269149;