Aash000736.1
Basic Information
- Insect
- Aphaenogaster ashmeadi
- Gene Symbol
- bab2
- Assembly
- GCA_003063805.1
- Location
- NJRQ01000479.1:1-6300[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 8.4e-16 7.4e-13 48.4 0.0 2 42 388 429 387 442 0.95
Sequence Information
- Coding Sequence
- TTAAGTTCACAAGAGGCTCTTCCTACCGTCGTCACGATGTCTATGCAACAGTTCTGTCTGCGATGGAATAATCATCAACCGAATTTCATCTCGGTTTTTTCCAATTTGCTGAATAATGAAACTCTAGTGGACGTCACTCTCGCTGCCGAAGGCAGGCAAATTCAGGCTCACAAAGTTGTGCTGTCAGCATGCAGTACGTACTTTCAGTCGCTGTTCACAGTGAATCCTTGTCAGCATCCTATTGTCATACTCAAGGACATCAAGTTTTCCGACCTCAAGATTATGGTGGACTTTATGTATTATGGAGAAGTGAACATATCTCAAGACCAATTGCCATCCATCATAAAGACGGCAGAGAGCTTAAAAATAAAGGGACTCGCGGAAATGCATACAGCGTCATTAACTAAATGGCCAAGTGGAAGTAGTGAAACAGGCGGAGGGGATCGCGGCGAATCCTGCTCGCCAAGTCCATCTCCATTGTCTCCTTCTTTTCGTAGGAAAAGGTTAAGGAAGTCTTCTACTGGCTCAACATCTGGTTCCGGTGACAAACCAGAGGAAATGAATGAAATCACATTAGTGGCTACTAACATCGTCAAACCTGAACCCCTCATTGTGTCGCAAGAAAGTGGGGAAAATTTGAGGCGACCAGTAAACACTAGCACAGAATCTCAAGGCAGTATTGATGAAGATCAAATATCAATTatgaGTAATATGGAAACTAGTTCTGCTAATACACCAGCCCAAAGTGACGGTTCTATTCAAGATGTAAGTCAACAATCAGCAGGAAACATTGGACAAAGTTCTGTTTCTTCGCAACCACCTGTTCATCAAGGATTACAATGGACTATTATGGAGCACACATATCATCCGACACGTTTCGCTCTGTCCTCGTGTCAAACGAATCTGTCGATCCAAGCGTCGTCGGCGTTTACGACGCCCGAAATAACAGCATCCTCGACCATCAGCGATCAGTACTCTGGTACCAGCACGACTGGTTCCAGTTGCGCCCTGACGAACTATCCGAACTCCTCCCACGGGACGTTGCAGCACGCGTCGTCGGGTGGCCCCTCGCCATCGACGCAGTGCCCCAGTAACTGCCAGAGCCCCTGCGCCAGCCCGCAGACTGCGATTAAGAGGAAGCGCTCGACTAATCCGCAGGCAGACGAGAACTTTATACGCGCGCTCGATGCCGTGCGTTACGGTGGTATAGGGTTTTGCAAGGCGGCCAGGATGTTCGGCGTGAACAATCGAACGCTCTGGCTCGAGTACAAGAAGCGCGGCTATCCGAACAATCGGCCCAGTCTCAAGTCCCGCGTTAAGCAGGAGGTCAATTCCTCGCCGCCGCCGGCACCTGCGGCGCAGCCCATGAACTCGCAGAGCCCGACGCCTATGGGTCCGCCCACGACTCCGCACagcacacacaacacacataGCACGCATACCATGCTGACCAGCCACAGTCCCCACACGATGCTGAGTGGTTACATTGACAGGCATACGGACTATACGCTACCGAGTTCCACAATGCCGATCAATCTGCACGGCGTTAATTACAATGCCATGTGA
- Protein Sequence
- LSSQEALPTVVTMSMQQFCLRWNNHQPNFISVFSNLLNNETLVDVTLAAEGRQIQAHKVVLSACSTYFQSLFTVNPCQHPIVILKDIKFSDLKIMVDFMYYGEVNISQDQLPSIIKTAESLKIKGLAEMHTASLTKWPSGSSETGGGDRGESCSPSPSPLSPSFRRKRLRKSSTGSTSGSGDKPEEMNEITLVATNIVKPEPLIVSQESGENLRRPVNTSTESQGSIDEDQISIMSNMETSSANTPAQSDGSIQDVSQQSAGNIGQSSVSSQPPVHQGLQWTIMEHTYHPTRFALSSCQTNLSIQASSAFTTPEITASSTISDQYSGTSTTGSSCALTNYPNSSHGTLQHASSGGPSPSTQCPSNCQSPCASPQTAIKRKRSTNPQADENFIRALDAVRYGGIGFCKAARMFGVNNRTLWLEYKKRGYPNNRPSLKSRVKQEVNSSPPPAPAAQPMNSQSPTPMGPPTTPHSTHNTHSTHTMLTSHSPHTMLSGYIDRHTDYTLPSSTMPINLHGVNYNAM
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00729213;
- 90% Identity
- iTF_01354526;
- 80% Identity
- iTF_00127363; iTF_00128104; iTF_00129098; iTF_00126828; iTF_00128333; iTF_00128883; iTF_00126619; iTF_00127582; iTF_00126080;