Pelo032428.1
Basic Information
- Insect
- Pseudomyrmex elongatus
- Gene Symbol
- bab2
- Assembly
- GCA_014825605.1
- Location
- QVNY01033135.1:15974-19675[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 7.6e-16 1.5e-12 48.5 0.0 2 42 376 417 375 430 0.95 2 2 5.4 1e+04 -2.3 0.0 25 32 503 510 502 511 0.86
Sequence Information
- Coding Sequence
- ATGTCTATGCAACAGTATTGTTTACGATGGAACAATCATCAGCCAAATTTCATCTCGGTTTTCTCCAATTTGCTGAACAATGAAACCTTAGTGGACGTTACCCTTGCTGCCGAGGGCAGGCAAATTCAGGCTCACAAAGTTGTACTGTCGGCGTGCAGTACGTACTTTCAGTCGCTGTTCACAGTGAATCCCTGTCAGCATCCTATCGTTATACTTAAGGACATTAAGTATTCCGATCTGAAAATTATGGTGGACTTCATGTATTACGGAGAAGTGAACATATCACAGGATCAGTTGCCATCCATCATAAAGACTGCGGAGAGTTTAAAAATAAAGGGGCTCGCAGAAATGCACACAGCGTCATTGACCAAGTGGCCAAGCGGCAGCAGCGAAACCGGCGGAGGAGATCGTGGTGAATCTTGTTCACCCAGTCCGTCTCCATTGTCTCCCTCGTTTCGTAGAAAAAGATTAAGGAAATCTTCTACAGGTTCGACCTCTGGCTCAGGCGACAAACCGGAAGAGATTAACGAAATCACGTTAGTGGCCACCAACATTGTAAAACCCGAGCCTCTAATTGCCTCGCAAGAAAGTGGAGAAAATTTGAGGCGACCGGTGAATACCAGCACAGAATCTCAGGGCAGCATTGACGAAGATCAAATATCGATTATGAGTAATATGGAGACCAGTTCAGCCAACACGCCAGCTCAAAGCGACGGTTCTATTCAGGATGTAAGTCAACCGACCGGGGGGAATATCGGACAAGCAAGTTCCGTTTCTTCGCAACCACCAGTTCATCAAGGATTACAATGGACTATTATGGAGCACACATATCATCCACGTTTCGCTCTGTCCTCGTGTCAAACGAATCTGTCGATCCAAGCGTCGTCGGCGTTTACGACGCCCGAAATAACAGCATCCTCGACCATCAGCGATCAGTACTCTGGTACCAGCACGACTGGTTCCAGTTGCGCCTTGACGAACTATCCGAACTCCTCCCACGGGACGTTGCAACACTCGTCGTCGGGCGGACCCTCGCCATCGACGCAGTGCCCGAGTAACTGCCAGAGTCCTTGCGCCAGCCCGCAGACTGCGATTAAGAGGAAGCGCTCGACTAATCCACAGGCGGACGAGAACTTTATACGCGCGCTCGACGCCGTACGCTACGGTGGCATAGGGTTTTGCAAAGCGGCCAGGATGTTCGGCGTGAACAACCGAACGCTCTGGCTCGAGTATAAGAAGCGCGGCTACCCGAACAATCGGCCCAGTCTCAAGTCCCGCGTTAAGCAGGAGGTCAACTCCTCGCCGCCCCCGGCGCCACCGGCGGCGCAGCCCATGAACTCGCAGAGCCCGACACCGATGGGCCCGCCAACGACTCCGCACAGCACACACAATACTCACACCACCCACACCATGCTGACCAGTCACAGTCCTCACACGATGTTGAGCGGTTACATTGACAGCAGGCACACGGATTACTCATTGCCGAGTAGCACGATGCCGATCAATCTGCACGGCGTTAATTACAACACCATGTGA
- Protein Sequence
- MSMQQYCLRWNNHQPNFISVFSNLLNNETLVDVTLAAEGRQIQAHKVVLSACSTYFQSLFTVNPCQHPIVILKDIKYSDLKIMVDFMYYGEVNISQDQLPSIIKTAESLKIKGLAEMHTASLTKWPSGSSETGGGDRGESCSPSPSPLSPSFRRKRLRKSSTGSTSGSGDKPEEINEITLVATNIVKPEPLIASQESGENLRRPVNTSTESQGSIDEDQISIMSNMETSSANTPAQSDGSIQDVSQPTGGNIGQASSVSSQPPVHQGLQWTIMEHTYHPRFALSSCQTNLSIQASSAFTTPEITASSTISDQYSGTSTTGSSCALTNYPNSSHGTLQHSSSGGPSPSTQCPSNCQSPCASPQTAIKRKRSTNPQADENFIRALDAVRYGGIGFCKAARMFGVNNRTLWLEYKKRGYPNNRPSLKSRVKQEVNSSPPPAPPAAQPMNSQSPTPMGPPTTPHSTHNTHTTHTMLTSHSPHTMLSGYIDSRHTDYSLPSSTMPINLHGVNYNTM
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00729213;
- 90% Identity
- iTF_01354526;
- 80% Identity
- iTF_01267467;