Pimp012750.2
Basic Information
- Insect
- Prenolepis imparis
- Gene Symbol
- bab2
- Assembly
- GCA_030444845.1
- Location
- JAUDTA010000005.1:3348849-3352672[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 5.2e-16 1.5e-12 48.4 0.0 2 42 381 422 380 425 0.94 2 2 0.88 2.6e+03 -0.3 0.0 30 44 425 440 424 441 0.85
Sequence Information
- Coding Sequence
- ATGTCTTTGCAACAGTACTGTTTGCGGTGGAACAATCATCAGCCGAATTTCATCTCGGTCTTCTCCAACTTGTTAAATAATGAGACTCTAGTGGATGTTACTCTCGCTGCAGAAGGCAGGCAAATTCAGGCCCACAAAGTTGTACTGTCGGCATGCAGTACATATTTTCAGTCGCTGTTTACAGTGAATCCTTGTCAACACCCTATCGTTATACTTAAAGACATCAAGTTTTCAGACCTCAAAATCATGGTAGACTTTATGTACTATGGAGAAGTAAACATATCTCAAGATCAATTACCATCTATcataaagACGGCAGAAAGCTTAAAGATAAAAGGACTTGCAGAAATGCATACGGCGTCAGTAACTAAATGGCCAAGTGGTAGTAGCGAAACAGGTGGAGGGGATCGTGGCGAATCCTGCTCACCTAGCCCATCTCCATTATCTCCTTCTTTTCGTAGAAAAAGATTACGGAAGTCTTCTACTGGCTCAACATCTGGTTCTGGCGACAGGCCGGAAGAAATCAATGAAATAACACTAGTGGCTACTAATATTGTAAAGCCCGAACCCCTAATTGCATCGCAAGAAAGTGGAGAGAATTTAAGGCGACCGGTAAATACCAGCACAGAATCTCAAGGCAGTATCGATGAAGATCAAATATCAATTATGAGTAATATGGAAACTAGTTCTACTAATACACCAGCCCAGAGTGATGGTTCTATTCAAGACGTAAATCAGCAGTCGACAGGAGGAAACATTGGGCAAAGTTCTGTCTCTTCGCAACCACCCTCATCTCATCAAGGATTACAATGGACTATTATGGAGCACACATATCATCCGACACGTTTCGCTCTGTCCTCGTGTCAAACGAATCTGTCGATCCAAGCGTCGTCGGCGTTCACGACGCCCGAAATAACAGCATCCTCGACCATCAGCGATCAGTACTCTGGTACCAGCACGACTGGTTCCAGTTGCGCCCTGACGAACTATCCAAACTCCTCCCACGGGACGTTGCAGcacgcgtcgtcgtcgtcgggcGGCGGCCCCCCGCCATCGGCGCAGTGCCCTAGTAACTGCCAGAGCCCGTGCGCCAGCCCGCAGACGGCGATTAAGAGGAAACGATCGACTAATCCACAGGCGGACGAGAACTTTATACGCGCGCTCGACGCCGTACGCTACGGCGGCATAGGTTTTTGCAAGGCGGCGAGGATGTTCGGCGTGAACAACCGAACGCTCTGGCTCGAGTACAAGAAGCGCGGCTACCCGAACAATCGGCCCAGCCTCAAGTCCCGCGTTAAGCAGGAGAACAACTCCtcgtcgccgccgccgccgccgtcgcAGGCGCCTCCGGCGCAACCCATGAACTCGTCGCAGAGCCCGACCCCGATGGGGCCGCCTACGACTCCGCACAGCACGCACAACACGCACAGCACGCACACCATGCTGACCAGCCACAGTCCCCACACGATGCTGAGCGGTTACATCGACAGGCATACGGACTATGCGCTACCGAGCACCACGATGCCGATCAATCTGCACGGCGTCAATTACAACGCCATGTGA
- Protein Sequence
- MSLQQYCLRWNNHQPNFISVFSNLLNNETLVDVTLAAEGRQIQAHKVVLSACSTYFQSLFTVNPCQHPIVILKDIKFSDLKIMVDFMYYGEVNISQDQLPSIIKTAESLKIKGLAEMHTASVTKWPSGSSETGGGDRGESCSPSPSPLSPSFRRKRLRKSSTGSTSGSGDRPEEINEITLVATNIVKPEPLIASQESGENLRRPVNTSTESQGSIDEDQISIMSNMETSSTNTPAQSDGSIQDVNQQSTGGNIGQSSVSSQPPSSHQGLQWTIMEHTYHPTRFALSSCQTNLSIQASSAFTTPEITASSTISDQYSGTSTTGSSCALTNYPNSSHGTLQHASSSSGGGPPPSAQCPSNCQSPCASPQTAIKRKRSTNPQADENFIRALDAVRYGGIGFCKAARMFGVNNRTLWLEYKKRGYPNNRPSLKSRVKQENNSSSPPPPPSQAPPAQPMNSSQSPTPMGPPTTPHSTHNTHSTHTMLTSHSPHTMLSGYIDRHTDYALPSTTMPINLHGVNYNAM
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00729213;
- 90% Identity
- iTF_01354526;
- 80% Identity
- -