Ngoo010302.1
Basic Information
- Insect
- Nomada goodeniana
- Gene Symbol
- lola
- Assembly
- GCA_963969485.1
- Location
- OZ018304.1:16949637-16952804[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 2.6e-16 4.9e-13 48.5 0.0 2 42 375 416 374 429 0.95
Sequence Information
- Coding Sequence
- ATGTCGATGCAACAGTTCTGTCTGCGGTGGAACAATCATCAGCCGAACTTCATTTCGGTGTTCTCCACTTTATTGAACAATGAAACATTGGTCGATGTAACCCTGGCGGCTGAAGGCAGGCATCTTCAGGCGCACAAAGTTGTATTGTCGGCGTGCAGCACATACTTCCAATCTTTGTTTACAGTGAATCCATGTCAGCATCCAATTGTTATATTAAAGGATGTAAAATTTTCAGACTTGAAAATCATGGTTGACTTTATGTATTATGGTGAAGTAAACATATCACAGGATCAGTTGCCGTCTATTATAAAGaCTGCAGAgagtttgaaaataaaaggacTGGCAGAAATGCACACTGCATCGTTAACCAAGTGGCCGAACGCCAGTAGCGAAcccggaggaggaggagatcGGGGAGAATCTTGTTCGCCTAGTCCATCTCCATTGTCGCCGTCTTTTCGTAGAAAGAGATTAAGGAAATCCTCGATTTGTTCAACATCTGGATCTGGTGATAAGCAGGaggaaatgaacgaaatcaCACTGGTTGctacaaatattgtaaaacCGGAACCGCTGATAGTTTCGCACGAAGGTGGCGAAAGTCTAAGGAGACCTGTTAATACCAATACAGAATCTCAAGGAAGCATCGACGAGGATCAAATATCTATTATGAGTAACATGGAGAACAGTTCAGCAGCGACTCCAGTGCAGAGTGATGGTTCCATGCAAGACGTTAGTCAACAATCCAGTGGAAATGTGGCCCAAAGTTCAGTTTCTTCGCAACCACCTGCACATCAAGGATTACAATGGACTATTATGGAGCATACATATCCACGTTTCGCTCTGTCCTCGTGTCAAACGAATCTGTCGATCCAAGCGTCATCAGCTTTTACCACGCCCGAAATAACAGCTTCCTCGACCATCAGCGATCAGTATTCTGGTACCAGCACGACTGGTTCCAGTTGCGCCCTGACCAATTACCCGAACTCGTCGCACGGGACGTTGCAGCACGCTTCGTCTACCGGTCCATCACCGTCGACACAGTGCCCAAGTAACTGCCAGAGTCCCTGCGCCAGCCCGCAGACCGCAATAAAGAGGAAACGATCGACCAATCCGCAAGCGGACGAGAATTTTATCAGGGCGTTAGACGCTGTGCGATACGGCGGTATAGGCTTCTGTAAAGCGGCCAGAATGTTCGGCGTGAATAATCGAACCCTCTGGCTCGAATATAAAAAGCGCGGCTACCCGAACAATCGACCGAGCTTGAAATCAAGGGTGAAACAAGAAGTGAATTCCTCACCGCCGCCGGCACCTACGGCGCAGCCTGTTAATTCGCAGAGTCCTACGCCGATGGGTCCACCCACCACACCGCATAGTACACACAATACCCACAGCACGCATACCATGCTGACCACTCACAGTCCTCATACGATGTTAAGCGGTTATATCGACAGCAGGCATACGGATTACGCGTTGCCCAGCACCACAATGCCAATCAATTTGCACGGCGTTAACTATAACGCGATGTGA
- Protein Sequence
- MSMQQFCLRWNNHQPNFISVFSTLLNNETLVDVTLAAEGRHLQAHKVVLSACSTYFQSLFTVNPCQHPIVILKDVKFSDLKIMVDFMYYGEVNISQDQLPSIIKTAESLKIKGLAEMHTASLTKWPNASSEPGGGGDRGESCSPSPSPLSPSFRRKRLRKSSICSTSGSGDKQEEMNEITLVATNIVKPEPLIVSHEGGESLRRPVNTNTESQGSIDEDQISIMSNMENSSAATPVQSDGSMQDVSQQSSGNVAQSSVSSQPPAHQGLQWTIMEHTYPRFALSSCQTNLSIQASSAFTTPEITASSTISDQYSGTSTTGSSCALTNYPNSSHGTLQHASSTGPSPSTQCPSNCQSPCASPQTAIKRKRSTNPQADENFIRALDAVRYGGIGFCKAARMFGVNNRTLWLEYKKRGYPNNRPSLKSRVKQEVNSSPPPAPTAQPVNSQSPTPMGPPTTPHSTHNTHSTHTMLTTHSPHTMLSGYIDSRHTDYALPSTTMPINLHGVNYNAM
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00729213;
- 90% Identity
- iTF_01424286;
- 80% Identity
- iTF_01067691;