Dros009465.1
Basic Information
- Insect
- Diplolepis rosae
- Gene Symbol
- lrrfip2
- Assembly
- GCA_030998225.1
- Location
- JAPYXD010000262.1:1168576-1188881[-]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 4.1e-115 1.4e-110 371.2 31.6 1 300 29 327 29 327 0.97 2 3 0.0074 2.5e+02 2.6 3.3 122 171 327 376 325 380 0.91 3 3 0.07 2.3e+03 -0.6 5.0 133 167 359 393 348 402 0.62
Sequence Information
- Coding Sequence
- ATGGAGTCTTTCGTAACTGGACGGAGGCGAACTGCCACGAGGCATTCAGCCGAAGATCAAGCTTTGGACCAAATTGCTAAAGAGGCAGAAGCAAGGCTAGCGGCTAGACGGCAAGCGAGGGCTGAAGCAAGAGAAATTCGAATGCGCGAATTAGAGAGACAGCAAAAAGAAGCTGAAGAAAATGCAGACAGAGTTTATGATATGTGCACAGCAGACAGTACACGGACAATGAGAGTAACACCAGATCCTATCAGGACTTCTCGTCTTCTTGCAAATTCAAATAGCTTCCAGTCTAGTCGGAGGTCATCTGAAGATTCCTTAGAGGATGCTGGTATTGGCAGAGATCCTAGAATAGAACTTaaggaatttgaagaaaaattcagGAAAGCAATGATTGCAAATGCTCAACTGGACAATGAAAAGTCGTCTTATGCTTATCAAGTGGATTTATTAAAAGATAAATTGGAGGAACTGGAAGAAACAGCCGCACAATTGCGGCGAGAACTAAGAGAAAAAAATCGAGAGGTAGAACAATTAAAACGCATTAGTCAAAGATTGAAAGAAGACTTAGATATATGTAGATCTCAGCTGATTGAAAGGGATTCTTTAATACAGgAGAATGGCTTGGTAATAATAGAAGATGAAGTAGGTAGTGATgaagaaattcaaaaagaaaatggtCCTCGTTCCAGAAAAAGAGTACTTGTCAGTTCAGAGGCAGCAGAAGTACTACAAACCGCGGGAGAAGGATCTTTAGatGTACGGCTGCGAAAGTTTGCTTCAGAAAAAAAGGAATTACAAGATGAAGTTCGTCACTTAAGATTAGAATTGGAAGAAGCTAGAAATCGTATGAGGCCAGAGAGAGCTACCGGTTTGGTATTTGGTGGCTTATCTGACTCTGATGATATCCAACGAGAAGCTAATAAATTGATCGCTGATTATAAATTCAAACTTCAAAAGACAGAACAAGATATGTCAACTTTACAAGCGACAGTTGCTAGGCTGGAAAGTCAAGTAATTCGTTACAAGTCAGCTGCAGAGGCATCGGAAAAGGCAGAAGATGAATTAAAAGTAGAGAAGAGAAAACTACAAAGAGAATTCAGAGAATCCCAAAGTCGAGTGGAAGAACTCGAAACTGCCAATACACATTTGCAACGAAGATTAGATAAGCTGAAGAATGCAAGATCCACCCTTTTAAAGGATATTTGA
- Protein Sequence
- MESFVTGRRRTATRHSAEDQALDQIAKEAEARLAARRQARAEAREIRMRELERQQKEAEENADRVYDMCTADSTRTMRVTPDPIRTSRLLANSNSFQSSRRSSEDSLEDAGIGRDPRIELKEFEEKFRKAMIANAQLDNEKSSYAYQVDLLKDKLEELEETAAQLRRELREKNREVEQLKRISQRLKEDLDICRSQLIERDSLIQENGLVIIEDEVGSDEEIQKENGPRSRKRVLVSSEAAEVLQTAGEGSLDVRLRKFASEKKELQDEVRHLRLELEEARNRMRPERATGLVFGGLSDSDDIQREANKLIADYKFKLQKTEQDMSTLQATVARLESQVIRYKSAAEASEKAEDELKVEKRKLQREFRESQSRVEELETANTHLQRRLDKLKNARSTLLKDI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00305050;
- 90% Identity
- iTF_01390213; iTF_01391973; iTF_00089542; iTF_00882025; iTF_00200748; iTF_01393518; iTF_00879631; iTF_00676721; iTF_00882961; iTF_01389426; iTF_00011094; iTF_00980118; iTF_00881243; iTF_01391102; iTF_00880447; iTF_01392768; iTF_01394298;
- 80% Identity
- -