Sgif001923.1
Basic Information
- Insect
- Synergus gifuensis
- Gene Symbol
- lrrfip2
- Assembly
- GCA_904066015.1
- Location
- CAJFCO010000131.1:2546238-2548659[+]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 1.2e-112 3.7e-108 362.2 31.2 1 300 29 327 29 327 0.96 2 3 0.0025 80 3.2 2.7 122 171 327 376 325 381 0.92 3 3 0.045 1.4e+03 -0.9 5.2 135 236 361 399 346 402 0.50
Sequence Information
- Coding Sequence
- ATGGAGTCATCTGTAGCAGGACGGAGGCGAACTGCCACGAGGCATTCTGCCGAAGATCAAGCTCTGGACCAAATTGCTAAAGAGGCCGAAGCAAGATTAGCGGCCAGGAGACAAGCTAGAGCTGAGGCGAGAGAAATTCGAATGCGTGAATTGGAACGGCTGCAAAAAGAAGCTGAGGAGACCGCTGACAGGGTCTATGACATGTGCACAGTAGATAGCAGTCGCACGATGAGGGTAACACCAGATCCTATAAGAACTTCCCGTCTCCTTGCAAATTCAAATAACTTTCAGTCTAGTCGGAGATCATCTGAAGATTCTTTAGAGGACGCTGGGCTTGGTAGAGATCCGAGAATAGAACTTAAAGAATTTGAAGAAAAATTCAGAAAAGCAATGATTGCTAATGCACAATTGGACAATGAAAAATCGTCTTACGCTTATCAAGTCGATTTATTAAAAGATAAACTAGAAGAATTAGAAGAAACGGCTGCTCAATTGCGGCGGGAACTGAGAGAAAAAAATCGAGAGGCAGAGCAACTGAAACGCATCAGTCAAAGATTGAAAGAAGACTTAGATATATGCAGAGCTCAATTAATAGAAAGGGATACTTTAATACAGGAAAATGGTTTGGTAATAGTAGAAGACGAAGGAAGTGACGATGAAGAAACAGAAGGAGAAAATGGTCTTCGTCCCAGAAGAAGAGTGCTGGTTAGTTCAGAAGCAGCAGAAGTATTACAAAACGCGGGAGAAGGCTCTTTAGATGTACGACTGAGAAAATTTGCGTCGGAGAAAAAGGAATTACAAGATGAAATTCGTCATTTACGACTCGAGTTGGAAGAAGCCAGGAATCGTATGAGGCCTGAAAGATCAACGGGTTTGGTATTAGGTGGGTTATCCGACTCGGAAGATGTTCAACGAGAAGCTAATAAGTTGATCGCAGATTATAAATTTAAACTACAAAAAACAGAGCAAGATATGTCAACATTGCAAGCTACAGTTGCCAGGCTAGAAAGTCAAGTGATTCGTTACAAGTCAGCTGCAGAAGCATCAGAAAAAGCAGAAGACGAATTGAAAGTAGAGAAGAGAAAATTGCAAAGAGAATTCAGAGAATCCCAAGGTCGTGTGGAAGAATTGGAAACTGCAAATACCCATTTGCAACGCAGATTAGATAAACTAAAAAATGCAAGATCCACTCTTTTGAAGGAGATATGA
- Protein Sequence
- MESSVAGRRRTATRHSAEDQALDQIAKEAEARLAARRQARAEAREIRMRELERLQKEAEETADRVYDMCTVDSSRTMRVTPDPIRTSRLLANSNNFQSSRRSSEDSLEDAGLGRDPRIELKEFEEKFRKAMIANAQLDNEKSSYAYQVDLLKDKLEELEETAAQLRRELREKNREAEQLKRISQRLKEDLDICRAQLIERDTLIQENGLVIVEDEGSDDEETEGENGLRPRRRVLVSSEAAEVLQNAGEGSLDVRLRKFASEKKELQDEIRHLRLELEEARNRMRPERSTGLVLGGLSDSEDVQREANKLIADYKFKLQKTEQDMSTLQATVARLESQVIRYKSAAEASEKAEDELKVEKRKLQREFRESQGRVEELETANTHLQRRLDKLKNARSTLLKEI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00305050;
- 90% Identity
- iTF_00460519;
- 80% Identity
- -