Scon009783.1
Basic Information
- Insect
- Synergus coniferae
- Gene Symbol
- lrrfip2
- Assembly
- GCA_032164275.1
- Location
- JAUEJJ010000042.1:946926-949496[-]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 8.5e-114 2.4e-109 365.9 33.1 1 300 29 327 29 327 0.96 2 3 0.0022 62 3.4 2.9 121 171 326 376 324 381 0.92 3 3 0.041 1.2e+03 -0.8 4.8 135 234 361 397 349 402 0.51
Sequence Information
- Coding Sequence
- ATGGAGTCATCTGTAGCAGGACGGAGGCGAACTGCCACGAGGCATTCTGCCGAAGATCAAGCTCTGGACCAAATTGCTAAAGAGGCAGAAGCAAGATTAGCAGCCAGACGACAAGCTAGAGCTGAGGCCAGAGAAATTCGAATGCGTGAATTGGAACGGCAGCAGAAAGAAGCTGAGGAGAACGCTGATAGGGTTTATGATATGTGCACAGTAGACAGCAGTCGCACAATGAGGGTAACACCAGATCCTATTAGGACTTCACGTCTCCTTGcaaattcaaataactttCAGTCTAGTCGGAGATCATCTGAAGATTCCTTGGAGGACGCTGGTCTTGGTAGAGATCCAAgaATAGaacttaaagaatttgaagaaaagttcaGAAAAGCAATGATTGCTAATGCACAATTGGACAATGAAAAGTCGTCTTACGCTTATCAAGTcgatttattaaaagataaacTAGAAGAATTAGAAGAAACGGTTGCTCAATTGCGGCGGGAactgagagaaaaaaatcgagaGGCAGAGCAACTGAAACGCATCAGTCAAAGATTGAAAGAAGACTTAGATATAAGCAGAGCTCAATTAATAGAAAGGGATACTTTAATACAGGAAAATGGTTTGGTAATAGTAGAAGACGAAGGAAGTGATGATGAAGAAACAGAAGGAGAAAATGGTCTTCGTCCCAGAAGAAGAGTGCTAGTTAGTACAGAAGCAGCAGAAGTATTACAAAACGCGGGAGAAGGCTCTTTAGATGTACGACTGAGAAAATTCGCGTCGGAGAAAAAGGAATTACAAGATGAAATTCGTCATTTACGACTCGAGTTGGAAGAAGCCAGAAATCGTATGAGGCCTGAAAGATCTACGGGTTTGGTATTAGGTGGGTTATCTGAATCGGAAGATGTTCAACGAGAAGCTAATAAGTTGATCGcagattataaatttaaactacAAAAGACAGAACAAGATATGTCAACATTGCAAGCTACAGTTGCAAGGCTAGAAAGTCAAGTGATTCGTTACAAGTCAGCTGCAGAAGCATCTGAAAAAGCAGAAGACGAATTGAAAGTAGAGAAGAGAAAACTGCAAAGAGAAttcaGAGAATCCCAAGGTCGTGTGGAAGAATTGGAAACTGCAAATACCCATTTGCAACGCAGATTAGATAAGCTAAAAAATGCAAGATCCACTCTTTTAAAAGAGATATGA
- Protein Sequence
- MESSVAGRRRTATRHSAEDQALDQIAKEAEARLAARRQARAEAREIRMRELERQQKEAEENADRVYDMCTVDSSRTMRVTPDPIRTSRLLANSNNFQSSRRSSEDSLEDAGLGRDPRIELKEFEEKFRKAMIANAQLDNEKSSYAYQVDLLKDKLEELEETVAQLRRELREKNREAEQLKRISQRLKEDLDISRAQLIERDTLIQENGLVIVEDEGSDDEETEGENGLRPRRRVLVSTEAAEVLQNAGEGSLDVRLRKFASEKKELQDEIRHLRLELEEARNRMRPERSTGLVLGGLSESEDVQREANKLIADYKFKLQKTEQDMSTLQATVARLESQVIRYKSAAEASEKAEDELKVEKRKLQREFRESQGRVEELETANTHLQRRLDKLKNARSTLLKEI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00305050;
- 90% Identity
- iTF_00460519;
- 80% Identity
- -