Sumb023496.1
Basic Information
- Insect
- Synergus umbraculus
- Gene Symbol
- lrrfip2
- Assembly
- GCA_900474325.1
- Location
- UCOK01008764.1:292578-297478[-]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 1.7e-114 4.5e-110 368.2 32.5 1 300 29 326 29 326 0.96 2 3 0.0023 60 3.3 2.6 122 172 326 376 324 381 0.92 3 3 0.01 2.7e+02 1.2 0.7 207 239 370 401 363 401 0.75
Sequence Information
- Coding Sequence
- ATGGAGTCATCTGTAGCAGGACGGAGGCGAACTGCCACGAGGCATTCTGCCGAAGATCAAGCTCTGGACCAAATTGCTAAAGAGGCCGAAGCAAGATTAGCAGCCAGGCGACAAGCTAGAGCTGAGGCGAGAGAAATTCGAATGCGTGAATTGGAACGGCAGCAAAAAGAAGCTGAGGAGAACGCTGACAGGGTCTATGACATGTGTACAGATAGCAGTCGCACGATGAGGGTAACACCAGATCCTATAAGAACTTCCCGTCTCCTTGCAAATTCAAATAACTTTCAGTCTAGTCGGAGATCATCTGAAGATTCTTTGGAGGACGCTGGGCTTGGTAGAGATCCGAgaATAGaacttaaagaatttgaagaaaaattcagaaaagcAATGATTGCTAATGCACAATTGGACAATGAAAAATCGTCTTACGCTTATCAAGTCGatttattaaaagataaacTAGAAGAATTAGAAGAAACGGCTGCTCAATTGCGGCGGGaactcagagaaaaaaatcgagaGGCAGAACAACTGAAACGCATCAGTCAAAGATTGAAAGAAGACTTAGATATATGCAGAGCTCAATTAATAGAAAGGGATACTTTAATACAGGAAAATGGTTTGGTAATAGTAGAAGACGAAGGAAGTGACGATGAAGAAACAGAAGGAGAAAATGGTCTTCGCCCCAGAAGAAGAGTGCTAGTTAGTTCAGAAGCAGCAGAAGTATTACAAAACGCGGGAGAAGGCTCTTTAGATGTACGACTGAGAAAATTTGCGTCGGAGAAAAAGGAATTACAAGATGAAATTCGTCATTTACGACTCGAGTTAGAAGAAGCCAGGAATCGTATGAGGCCTGAAAGATCAACGGGTTTGGTATTAGGTGGATTATCCGACTCGGAAGATGTTCAACGAGAAGCTAATAAGTTGATCGcagattataaatttaaactacAAAAAACAGAACAAGATATGTCAACATTACAAGCTACAGTTGCCAGGCTAGAAAGTCAAGTGATTCGTTACAAGTCAGCTGCAGAAGCATCTGAAAAAGCAGAAGACGAATTGAAAGTAGAgaagagaaaattgcaaagagAAttcaGAGAATCCCAAGGTCGTGTGGAAGAATTGGAAACTGCAAATACCCATTTGCAACGCAGATTagataaactaaaaaatgCAAGATCCACTCTTTTGAAGGAGATATGA
- Protein Sequence
- MESSVAGRRRTATRHSAEDQALDQIAKEAEARLAARRQARAEAREIRMRELERQQKEAEENADRVYDMCTDSSRTMRVTPDPIRTSRLLANSNNFQSSRRSSEDSLEDAGLGRDPRIELKEFEEKFRKAMIANAQLDNEKSSYAYQVDLLKDKLEELEETAAQLRRELREKNREAEQLKRISQRLKEDLDICRAQLIERDTLIQENGLVIVEDEGSDDEETEGENGLRPRRRVLVSSEAAEVLQNAGEGSLDVRLRKFASEKKELQDEIRHLRLELEEARNRMRPERSTGLVLGGLSDSEDVQREANKLIADYKFKLQKTEQDMSTLQATVARLESQVIRYKSAAEASEKAEDELKVEKRKLQREFRESQGRVEELETANTHLQRRLDKLKNARSTLLKEI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00305050;
- 90% Identity
- iTF_00460519;
- 80% Identity
- -