Sito006834.1
Basic Information
- Insect
- Synergus itoensis
- Gene Symbol
- lrrfip2
- Assembly
- GCA_904066005.1
- Location
- CAJFCP010000106.1:84910-87358[+]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 3.3e-114 1e-109 367.3 32.2 1 300 29 327 29 327 0.96 2 3 0.0029 90 3.0 3.0 122 171 327 376 325 380 0.92 3 3 0.054 1.7e+03 -1.2 5.2 135 234 361 397 349 402 0.51
Sequence Information
- Coding Sequence
- ATGGAGTCATCTGTAGCAGGACGGAGGCGAACTGCCACGAGGCATTCTGCCGAAGATCAAGCTCTGGACCAAATTGCTAAAGAGGCCGAAGCAAGATTAGCGGCCAGGCGACAAGCTAGAGCTGAGGCGAGAGAAATTCGAATGCGTGAATTGGAACGACAGCAAAAAGAAGCTGAGGAGAACGCTGATAGGGTCTATGACATGTGCACAGTAGATAGCAGTCGCACGATGAGGGTAACACCAGATCCTATAAGGACTTCCCGTCTCCTTGCAAATTCCAATAATTTTCAGTCTAGTCGGAGATCATCTGAAGATTCTTTGGAGGACGCTGGTCTTGGTAGAGATCCGAGAATAGAACTTAAAGAATTTGAAGAAAAATTCAGAAAAGCAATGATTGCTAATGCACAATTGGACAATGAAAAATCGTCTTACGCTTATCAAGTCGATTTATTAAAAGATAAACTAGAAGAATTAGAAGAAACGGCTGCTCAATTGCGGCGGGAACTGAGAGAAAAAAATCGAGAGGCAGAGCAACTGAAACGCATCAGTCAAAGATTGAAAGAAGACTTAGATATATGCAGAGCTCAATTAATAGAAAGGGATACTTTAATACAGGAAAATGGTTTGGTAATAGTAGAAGACGAAGGAAGTGACGATGAAGAAACAGAAGGAGAAAATGGTCTTCGTCCCAGAAGAAGAGTGCTAATTAGTTCAGAAGCAGCAGAAGTATTACAAAATGCGGGAGAAGGCTCTTTAGATGTACGATTGAGAAAATTCGCGTCGGAGAAAAAGGAATTACAAGATGAAATTCGTCATTTACGACTCGAGTTGGAAGAAGCCAGGAATCGTATGAGGCCTGAAAGATCATCGGGTTTGGTATTAGGTGGTTTATCCGACTCGGAAGATGTTCAGCGAGAAGCTAATAAGTTAATCGCAGATTATAAATTTAAACTACAAAAAACAGAACAAGATATGTCAACATTGCAAGCTACAGTTGCCAGGCTAGAAAGTCAAGTGATTCGTTACAAGTCAACTGCAGAAGCATCTGAAAAAGCAGAAGACGAATTGAAAGTAGAGAAGAGAAAATTGCAAAGAGAATTCAGAGAATCCCAAGGTCGTGTGGAAGAATTGGAAACTGCAAATACCCATTTGCAACGCAGATTAGATAAACTAAAAAATGCAAGATCCACTCTTTTGAAGGAGATATGA
- Protein Sequence
- MESSVAGRRRTATRHSAEDQALDQIAKEAEARLAARRQARAEAREIRMRELERQQKEAEENADRVYDMCTVDSSRTMRVTPDPIRTSRLLANSNNFQSSRRSSEDSLEDAGLGRDPRIELKEFEEKFRKAMIANAQLDNEKSSYAYQVDLLKDKLEELEETAAQLRRELREKNREAEQLKRISQRLKEDLDICRAQLIERDTLIQENGLVIVEDEGSDDEETEGENGLRPRRRVLISSEAAEVLQNAGEGSLDVRLRKFASEKKELQDEIRHLRLELEEARNRMRPERSSGLVLGGLSDSEDVQREANKLIADYKFKLQKTEQDMSTLQATVARLESQVIRYKSTAEASEKAEDELKVEKRKLQREFRESQGRVEELETANTHLQRRLDKLKNARSTLLKEI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00305050;
- 90% Identity
- iTF_00460519;
- 80% Identity
- -