Bcos000212.1
Basic Information
- Insect
- Bombus consobrinus
- Gene Symbol
- stc
- Assembly
- GCA_014737455.1
- Location
- JACXIU010000049.1:8201308-8206691[-]
Transcription Factor Domain
- TF Family
- zf-NF-X1
- Domain
- zf-NF-X1 domain
- PFAM
- PF01422
- TF Group
- Zinc-Coordinating Group
- Description
- This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 2 1.6e+04 -4.4 1.6 15 19 566 570 565 570 0.81 2 12 0.17 1.4e+03 -0.7 0.3 4 10 599 605 598 605 0.94 3 12 2.6e-05 0.22 11.5 14.9 4 19 616 631 614 631 0.93 4 12 2.8e-07 0.0023 17.8 16.4 1 18 667 684 667 685 0.97 5 12 3.4e-08 0.00028 20.7 9.2 1 19 723 741 723 741 0.98 6 12 2.4e-06 0.02 14.8 11.7 4 18 788 802 781 803 0.86 7 12 0.00059 4.8 7.2 8.4 1 11 843 853 843 854 0.97 8 12 2e-10 1.6e-06 27.8 13.8 1 19 870 888 870 888 0.98 9 12 0.52 4.2e+03 -2.2 0.6 5 10 916 921 916 922 0.89 10 12 2 1.6e+04 -8.4 11.4 10 19 935 945 924 945 0.77 11 12 2.2e-07 0.0018 18.1 12.3 1 16 981 996 981 1007 0.85 12 12 8.1e-06 0.067 13.1 13.6 1 19 1013 1032 1013 1032 0.97
Sequence Information
- Coding Sequence
- ATGGCTACTTGGGATGGTTCTTATTCAGGACCAGATGACCAAAATTATTGTCAAATGTATTCTGATCGAAGCGTACCTGGGCCCGCAACAGGAAATTGGACATTATTTTCTGATAATATAAATAACGATTATTTACAACCTAGTCGTGAGTTCTACGTACCAAATGAACCTATGTTTGAACAGAATAGCCCAAATGCTTTCTATCATTCGAACACGAATGTTATGCCAAGTTTGTTGACTACAACCAATAATTATCATGGGCATGTAATAAACCCAGTAGGAAATACGCAAGTATTAAATAGCGAGGAGTACTTTCCGACTGTTGTCAAATCTCAACAAGGCTACGTACCTGATGACTCTTGGAAATATGATAACAATGTAATGAAGAACGAAGATAAATATGCCTCTACAAAGGGAATTAAGGAATCTTCAGGCAGCATAGCCAATCACTCAAAATTACATGTCATGGCTGAAGAGTTTGTGCCAAATAATAGAGGATATGGTGATAGAAGTAAAAATAAAGAGTTAAAGAATACAAAATCTACTAATGATGCAAGTTATTGTGTCAAGGATAATGGCAAGATATCAGATAGATACTTCTTTTGTAATGAGAGTAGGCACGAAGGTAAATATAATAGCAGAAAATGTTCTGATTATAAGCACAAAGAAAGACAGCAAGATCATTGTTACAAAAAGAATGCATATACAAATTCCTATCAACAGCATAGAGAAGTCAAAACTTCTCATAAACTTCAAGGTAATAAATACTTTACTAATAAGTATTATGCAGGAAAATCACAAGTAAATTCAAAAGTTATAAATGAAAATGCATTGGATCAGTGTTCAATGACTAATAGTGCTACTTGTAATAATAGAAAGGATCCTGTAATAAATTTGAATGAAGGAGAATCATCGTTAAGTATGAATGTATGTTCAAATAAGAATAAAAATTTGTCGAATGAGGTTAATGATAAAAGAACTATCGCTGGTGATAATAATGTACAAGGTGATAGCATACAGCAGACCAAAAATTCGATGAAGGAATTTACTTACTATAATCCTGGCTTCAAACAGACCTACAATAATCATAGAAATTTAAGGAAATATCAGTATAATGATAGATATAACAGGGAAGAAAATTTTTATAAAGAAAAGCGACGTCACTATCCAGGATATGGTAGAGAAAATTATAATAAAGAAGATAAATTTAAAATAAGAAATGAAATGTGCAGTAATGGAGAATGTAACGAATATAAAGAATGTTTTAACGAGAGAACTGGATTAGAAGCAAAAGAGATGAAAGAGAAAAGGCACAACTATCAAGGATATAATGGATTTAAAGAACATCATAAGGAAGCTAAACTAGAAATCTTTAAAGAGAAAGATAGAGGTAAATATTATGCGCCTGAAAATAAAGAGAAAGGAAATGAACATTGGAGGAATAAAAGGGAAATTGGCGAGAGGAATAATATTCAGAAACGGGGACAAAATAGAAAGTCACCAGTTGATGATGATGCAAGTCAAAGAGAAAGACTAGCAGAACAGTTGAATAGAGGGCAATTAGAATGTTTAGTATGTTGTGAATATATTAAACAGAATGATTATGTTTGGTCATGTTCTAACTGCTATCATGTATTGCATCTGAAATGTATTAAAAAATGGGCAAAGTCATCACAATCTGAAAATGGCTGGAGATGTCCAGCATGTCAAAATGTTAACTTAGTAATTCCTGAAGATTACTTTTGCTTTTGTGGCAAAACAAGAGTGCCTGAATGGAATCGTAGGGATGTTGCGCATTCTTGTGGTGAAATTTGCGCTAGAACATTATCCAAAAATAGTTGTCCACATAAGTGCACTCTCCTATGCCATCCTGGATCTTGTCCACAATGTACGGCAATGGTAACGAAATATTGTGGCTGCGGTAAAACTCAGCAAACAGTACAGTGTAGTACTCAGAAATTATTGCTGTGTGAGTCTATATGCGGTAAAAATTTAAAATGTGGCAGGCATAAATGTCAAAGTAAATGCCATCATGGAGAATGTGCAAATTGCGAAGAGACAATAACGCAAAACTGTTATTGTGGCAAAAGTACAAAAGAAATAACTTGTCAGAGTAATATTTCGTTTACATATTCTTGTGGAACTATTTGCGGTAAATTGTTAGAATGTGGTAATCACACTTGTACAAAATTATGTCATGCGGATGCTTGCGAATCCTGTTCTTTAACTCCTGACAAAATTACGACTTGCTGCTGCGGTCAAACACCATTAACAGATAAGAGACAAACTTGCTTAGATTCAATTCCAGTCTGTGACAAAATATGTTTGAAAAATTTGAAATGCGGGCAACCCAACAATCCTCATAAGTGTAAAGTGAAGTGTCATGTAGGAGATTGTCCTGTTTGTGACTTAATTACCAATGTTAGATGCCGTTGCGGAAACATGGATAGGGAAATAGCTTGTAAAGATTTGATATCAAAGGCTGATGATGCACGGTGTGAAAAGAGGTGTATAAAAAAGAGGTCTTGTGGGAAGCACAAATGTAACCAACTGTGTTGTATAGAGATAGAACATATTTGTCCATTAATATGTTCTAAAACTTTAAGCTGTGGGAGGCATAAATGTGAACAAAGTTGTCATAAAGGAAGGTGTCAACCTTGTTGGCGAAGTAGTTTCGATGAATTATACTGTGAATGCGGGGCTTCTGTGATATATCCTCCAGTTCCTTGTGGGACAAGAAGACCTACATGTGACAGACCTTGCTCTCGACAGCACTCTTGTGGCCACGAAATATTACATAATTGCCATAGCGAACTAAACTGTCCGCCTTGTACCGTTCTTACTCAAAGATGGTGTCATGGCAAACATGAATTACGAAAAGCTGTACCATGCTATGTTAACGAAATTTCATGCGGTCTGTCATGTAACAAGCCCATATCCTGTGGCCGACATAAATGCATTACTATTTGTCATTCTGGTCCATGTGAAAAACCAGGACAACAATGTTCTCAGCCTTGTACTGTTCAAAGGGAACTGTGCGGACACATCTGTGCTGCTCCATGTCACGAGGGTAAATGTCCAGACACACCTTGCAAGGAGATGGTTAAGGTGACGTGTCAGTGTGGGCATAGGACTATGTCGCGTGTTTGCGCCGAAAATTCTAAAGAATATCAGAGAATAGCAAGTAGCATATTAGCTAGTAAAATGGCTGATATGCAATTAGGTCATTCTATTAATTTGGAAGAAGTATTTGGTCAAGGAGCAAAGAAGCAGAATCAGTTAAAAACTTTAGAGTGCAATGATGAATGTAAAATAATAGAACGTAATAGAAGATTGGCGTTGGGTTTGCAAATTGCAAATCCAGATTTAAGTGGAAAATTAATGCCTAGATACAGTGATTTTATGAAACAGTGGGCTAAAAAGGATCCCCATTTTTGTCAGATGGTTCATGACAAATTAACCGAGTTGGTACAATTGGCAAAAACTTCTAAACAAAAGTCACGCAGTTATTCCTTTGATAGCATGAACAAAGATAAACGTCATTTTATTCACGAGTCTTGTGAACATTTTGGTTGCGAAAGCCAGGCATATGACCAGGAGCCAAAAAGAAATGTTGTTGCGACTGCTGTAAAAGATAAGTGTTGGTTACCTAGTTATAGTTTATTAGAGATTGTACAACGGGAAAATGGTCAGAGGAAAGTTCCAGGTCCAATGTTAAATACTACAAAAGCTGATGGGTCCGTGAAGACAATATTATCACTGCCTGCGAAAAAGATCCAAAAGCCAGAAACAACATTAAGCATAAAAACATCAGAACCAGAAATAGATTATTTTGATTATAAGGGTTAA
- Protein Sequence
- MATWDGSYSGPDDQNYCQMYSDRSVPGPATGNWTLFSDNINNDYLQPSREFYVPNEPMFEQNSPNAFYHSNTNVMPSLLTTTNNYHGHVINPVGNTQVLNSEEYFPTVVKSQQGYVPDDSWKYDNNVMKNEDKYASTKGIKESSGSIANHSKLHVMAEEFVPNNRGYGDRSKNKELKNTKSTNDASYCVKDNGKISDRYFFCNESRHEGKYNSRKCSDYKHKERQQDHCYKKNAYTNSYQQHREVKTSHKLQGNKYFTNKYYAGKSQVNSKVINENALDQCSMTNSATCNNRKDPVINLNEGESSLSMNVCSNKNKNLSNEVNDKRTIAGDNNVQGDSIQQTKNSMKEFTYYNPGFKQTYNNHRNLRKYQYNDRYNREENFYKEKRRHYPGYGRENYNKEDKFKIRNEMCSNGECNEYKECFNERTGLEAKEMKEKRHNYQGYNGFKEHHKEAKLEIFKEKDRGKYYAPENKEKGNEHWRNKREIGERNNIQKRGQNRKSPVDDDASQRERLAEQLNRGQLECLVCCEYIKQNDYVWSCSNCYHVLHLKCIKKWAKSSQSENGWRCPACQNVNLVIPEDYFCFCGKTRVPEWNRRDVAHSCGEICARTLSKNSCPHKCTLLCHPGSCPQCTAMVTKYCGCGKTQQTVQCSTQKLLLCESICGKNLKCGRHKCQSKCHHGECANCEETITQNCYCGKSTKEITCQSNISFTYSCGTICGKLLECGNHTCTKLCHADACESCSLTPDKITTCCCGQTPLTDKRQTCLDSIPVCDKICLKNLKCGQPNNPHKCKVKCHVGDCPVCDLITNVRCRCGNMDREIACKDLISKADDARCEKRCIKKRSCGKHKCNQLCCIEIEHICPLICSKTLSCGRHKCEQSCHKGRCQPCWRSSFDELYCECGASVIYPPVPCGTRRPTCDRPCSRQHSCGHEILHNCHSELNCPPCTVLTQRWCHGKHELRKAVPCYVNEISCGLSCNKPISCGRHKCITICHSGPCEKPGQQCSQPCTVQRELCGHICAAPCHEGKCPDTPCKEMVKVTCQCGHRTMSRVCAENSKEYQRIASSILASKMADMQLGHSINLEEVFGQGAKKQNQLKTLECNDECKIIERNRRLALGLQIANPDLSGKLMPRYSDFMKQWAKKDPHFCQMVHDKLTELVQLAKTSKQKSRSYSFDSMNKDKRHFIHESCEHFGCESQAYDQEPKRNVVATAVKDKCWLPSYSLLEIVQRENGQRKVPGPMLNTTKADGSVKTILSLPAKKIQKPETTLSIKTSEPEIDYFDYKG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00223562; iTF_00226283; iTF_00220944; iTF_00218105; iTF_00227642; iTF_00221630; iTF_00215391; iTF_00230401; iTF_00233596; iTF_00231686; iTF_00220165; iTF_00226964; iTF_00218796; iTF_00219489; iTF_00216077; iTF_00228348; iTF_00222224; iTF_00141523; iTF_00142772; iTF_00229044; iTF_00229716; iTF_00216761; iTF_00231000; iTF_00684506; iTF_00685113; iTF_00222878; iTF_00140959; iTF_00224927; iTF_00224246; iTF_00142176; iTF_00225600;
- 90% Identity
- iTF_00223562; iTF_00220944; iTF_00219489; iTF_00231686; iTF_00226283; iTF_00222224; iTF_00226964; iTF_00216761; iTF_00222878; iTF_00229044; iTF_00229716; iTF_00224246; iTF_00218796; iTF_00224927; iTF_00231000; iTF_00218105; iTF_00227642; iTF_00220165; iTF_00228348; iTF_00216077; iTF_00233596; iTF_00230401; iTF_00221630; iTF_00215391; iTF_00225600;
- 80% Identity
- -