Basic Information

Insect: Bombus breviceps
Gene Symbol: stc
Assembly: GCA_014825925.1
Location: CM026190.1:3500463-3505256[-]

Transcription Factor Domain

TF Family: zf-NF-X1
Domain: zf-NF-X1 domain
PFAM: PF01422
TF Group: Zinc-Coordinating Group
Description: This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 2 1.6e+04 -4.4 1.6 15 19 564 568 563 568 0.81

2 14 0.17 1.3e+03 -0.7 0.3 4 10 597 603 596 603 0.94

3 14 2.6e-05 0.21 11.5 14.9 4 19 614 629 612 629 0.93

4 14 2 1.6e+04 -4.1 1.4 6 10 655 659 655 659 0.97

5 14 2.8e-07 0.0022 17.8 16.4 1 18 665 682 665 683 0.97

6 14 3.4e-08 0.00027 20.7 9.2 1 19 721 739 721 739 0.98

7 14 1.1e-06 0.0086 15.9 11.8 4 18 786 800 779 801 0.86

8 14 0.00059 4.6 7.2 8.4 1 11 841 851 841 852 0.97

9 14 0.096 7.5e+02 0.1 0.9 4 10 856 862 855 862 0.91

10 14 2e-10 1.6e-06 27.8 13.8 1 19 868 886 868 886 0.98

11 14 0.51 4e+03 -2.2 0.6 5 10 914 919 914 920 0.89

12 14 2 1.6e+04 -8.4 11.4 10 19 933 943 922 943 0.77

13 14 2.2e-07 0.0018 18.1 12.3 1 16 979 994 979 1005 0.85

14 14 8.1e-06 0.064 13.1 13.6 1 19 1011 1030 1011 1030 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	2	1.6e+04	-4.4	1.6	15	19	564	568	563	568	0.81
2	14	0.17	1.3e+03	-0.7	0.3	4	10	597	603	596	603	0.94
3	14	2.6e-05	0.21	11.5	14.9	4	19	614	629	612	629	0.93
4	14	2	1.6e+04	-4.1	1.4	6	10	655	659	655	659	0.97
5	14	2.8e-07	0.0022	17.8	16.4	1	18	665	682	665	683	0.97
6	14	3.4e-08	0.00027	20.7	9.2	1	19	721	739	721	739	0.98
7	14	1.1e-06	0.0086	15.9	11.8	4	18	786	800	779	801	0.86
8	14	0.00059	4.6	7.2	8.4	1	11	841	851	841	852	0.97
9	14	0.096	7.5e+02	0.1	0.9	4	10	856	862	855	862	0.91
10	14	2e-10	1.6e-06	27.8	13.8	1	19	868	886	868	886	0.98
11	14	0.51	4e+03	-2.2	0.6	5	10	914	919	914	920	0.89
12	14	2	1.6e+04	-8.4	11.4	10	19	933	943	922	943	0.77
13	14	2.2e-07	0.0018	18.1	12.3	1	16	979	994	979	1005	0.85
14	14	8.1e-06	0.064	13.1	13.6	1	19	1011	1030	1011	1030	0.97

Sequence Information

Coding Sequence: ATGGCTACTTGGGACGGTTCTTATTCAGGACCAGATGAccaaaattattgtcaaatgTATTCTGATCAAAGCGTACCCGGGCCTGCAACAGGAAATTGGACattattttctgataatataaataacgattattTACAACCTAGTCGTGAGTTCTACGTACAAAATGAACCTATATTTGAACAGAATAGTCCAAATGCTTTCTATCATTCGAACACGAATGTTATGCCAAGTTTGTTGACTACAACCAATAATTATCATGGGCATGTAATAAACCCAGTAGGAAATACACAAGTATTAAATAGTGAGGAGTACTTTTCAACTGTTGTCAAATCTCGACAAGGCTACGTGTCTGATGACCCTTGGAAATATGATAACAATCTAATGAAGAACGAAGATAAACATGTCTCTACAAAGAGAATTAAGGAATCTTCAGGCAGCATGGTCAATCACTCAAAATTACATGTGATGGCTGAGGAGTTCGTGCCAAATAATAGAGGATATGGCGatagaagtaaaaataaagagctagagaatataaaatctaCTAATGATGCAAATTATTGTGTCAAGAATAATGGCGAGATATCAGACAAATACTTCTTTTGTAACGAGAGTAGGCATGAaggtaaatataataacaaaaaatgttcTAATTATAAGCACAAAGAAAGACAGCAAGATCAGTGTTACAAAAAAAATGCGTATACAAATTCCTATCAACAGCATGTCAAAACTTCTCATAAACTTCAAGGTAATAAATACTTTACTAATAAGTATTATGCAGGAAAATCGCAAGTAAATTCAAaagttataaatgaaaatgcatTGGATCAATGTTCAATGACTAATAGTGCtacttgtaataataaaaaggatcctgtaataaatttgaataaaggAGAATCATCGTTAAGTATGAATGTATGTtcaaataaagataaaaatttgtcggaTGAGGTTAATGATAAAAGAACTATCATTGGTGATAATAATGTACAAGGTGATAGCATACGGCAGCCCAAAAATTCGATGAAGGAATTTACTTACTATAATCCTGGCTTCAAACAGACCTATAAtaatcatagaaatttaagGAAATATCAGTATAATGATAGATATAACagggaagaaaatttttataaagaaaagcGACATCACTATCCAGGATACGGTAGAGAAAGttataataaagaagataaatttaaaataagaaatgaaatgtgCAGCAATGGAGAATGTAACGAATATAAAGAATGTTTTAACGAGAGAACTGGATTAGAAGCaaaagagataaaagagaaaaggcaCAACTATCAAGGATATAATGGATTTAAAGAACATCATAGGGAAGCTAAACTAGAAATCTTCAAGGAGAAAGATAAAGgtaaatattatgtatctgaaaataaagagaaaggaaatgaaCATTGGAGAAATAAAAGGGAAATCagcgaaagaaataatattcagaAACGGGGACGAAATAGAAAGTCTCCAGTTGATGATGATGCAAGTCAAAGAGAAAGACTAGCAGAACAGTTGAATAGAGGACAATTAGAATGTTTAGTATGCTGCGAATATATTAAACAGAATGATTATGTTTGGTCATGTTCTAACTGTTATCATGTGTTGCATctgaaatgtattaaaaaatgggCAAAGTCATCACAATCTGAAAATGGCTGGAGATGTCCAGCGTGCCAAAATGTTAACTTAGTGATTCCTGAAGATTATTTTTGCTTTTGTGGCAAAACAAGAGTACCCGAATGGAATCGTAGAGATGTTGCGCATTCTTGTGGCGAAATTTGCGCTAGAACATTATCCAAAAATAGTTGTCCACATAAGTGCACTCTTCTATGCCATCCTGGATCTTGTCCACAATGTACAGCAATGGTAACAAAATATTGTGGCTGCGGTAAAACTCAGCAAACTGTACAGTGTAGTACTCAGAAATTATTGCTGTGCGAGTCTGTATgtggtaaaaatttaaaatgtggCAGGCATAAATGTCAAAGTAAATGCCATCATGGAGAATGTGCAAACTGTGAAGAAACAATAACGCAaaAGTGTTATTGTGGCAAAagtacaaaagaaataacttGCCAGAgtaatatttcgtttacaTATTCTTGTGGAACTATTTGCGGCAAATTGTTAGAATGTGGTAATCATACTTGTACAAAATTGTGTCATGCGGATGCTTGCGAATCCTGTTCTCTAACTCCTGACAAAATTACAACTTGTTGCTGTGGGCAAACACCGTTAATAGATAAGAGACAAACTTGCTTAGATTCAATACCAGTCTGTGacaaaatatgtttgaaaaatttgaaatgcgGGCAACCTAATAATCCTCATAAGTGTAAAGCGAAGTGTCATGTAGGAGATTGTCCTGTTTGTGACTTAATTACCAATGTTAGATGCCGCTGCGGAAACATGGATAGGGAAATAGCTTGTAAAGATTTGATATCAAAAGCGGACGATGCACGGTGTGAAAAgagatgtataaaaaaaaggtCTTGTGGGAAGCACAAATGTAACCAACTGTGTTGTATAGAGATAGAACATACTTGTCCATTGATATGTTCTAAAACTTTAAGCTGTGGGAGGCATAAATGTGAACAAAGCTGTCATAAAGgaAGGTGTCAACCTTGCTGGCGAAGTAGTTTTGATGAATTATACTGTGAATGCGGGGCTTCTGTGATATATCCTCCCGTTCCTTGTGGGACAAGAAGACCTACATGTGATAGACCTTGCTCTCGACAGCACTCTTGCGGCcatgaaatattacataattgcCATAGTGAATTAAACTGTCCGCCTTGTACTGTTCTTACTCAAAGATGGTGTCATGGCAAACATGAGTTACGAAAAGCTGTACCATGCTATGTCAACGAAATTTCATGTGGTTTGTCATGTAACAAGCCCATATCCTGTGGCCGACATAAATGCATTACTATTTGTCATTCTGGACCATGTGAAAAACCAGGACAACAATGCTCTCAGCCTTGTACTGTTCAAAGGGAACTGTGTGGACACATCTGTGCTGCTCCGTGTCACGAGGGTAAATGTCCAGACACACCTTGCAAGGAGATGGTTaagGTGACGTGTCAGTGTGGGCATAGGACTATGTCGCGTGTTTGCGCCGAAAATTCTAAAGAATATCAGAGAATAGCAAGTAGCATATTAGCTAGTAAAATGGCCGATATGCAATTAGGTCATTCTATTAATTTGGAAGAAGTATTTGGTCAAGGAGCAAAGAAGCAGAATCAATTAAAGACTTTAGAATGCAATgatgaatgtaaaataatagaacGGAATAGAAGATTGGCGTTGGGTTTGCAAATAGCAAATCCAGATTTAAGTGGGAAATTAATGCCTAGATACAGTGATTTTATGAAACAGTGGGCTAAAAAGGATCCTCATTTTTGTCAGATGGTTCATGACAAATTAACCGAGTTGGTTCAATTAGCGAAAACCTCTAAACAAAAATCACGTAGTTATTCCTTTGATAGCATGAACAAAGATAAACGTCATTTTATTCACGAGTCTTGCGAACATTTTGGTTGTGAAAGTCAGGCATATGATCAGGAGCCAAAAAGAAATGTTGTTGCGACTGCTGTAAAAGATAAGtgTTGGTTACCTAGTTATAGTTTATTAGAGATTGTACAACGGGAAAATGGTCAGAGAAAAGTTCCAGGTCCAATGTTAAATACTACAAAAGCTGATGGGTCCGTGAAGACAATATTATCACTGCCTGCGAAAAAGATTCAAAAGCCAGAAACAACATTAAGCATAAAAACATCAGAACCAGAAATagattattttgattataagGGTTAA
Protein Sequence: MATWDGSYSGPDDQNYCQMYSDQSVPGPATGNWTLFSDNINNDYLQPSREFYVQNEPIFEQNSPNAFYHSNTNVMPSLLTTTNNYHGHVINPVGNTQVLNSEEYFSTVVKSRQGYVSDDPWKYDNNLMKNEDKHVSTKRIKESSGSMVNHSKLHVMAEEFVPNNRGYGDRSKNKELENIKSTNDANYCVKNNGEISDKYFFCNESRHEGKYNNKKCSNYKHKERQQDQCYKKNAYTNSYQQHVKTSHKLQGNKYFTNKYYAGKSQVNSKVINENALDQCSMTNSATCNNKKDPVINLNKGESSLSMNVCSNKDKNLSDEVNDKRTIIGDNNVQGDSIRQPKNSMKEFTYYNPGFKQTYNNHRNLRKYQYNDRYNREENFYKEKRHHYPGYGRESYNKEDKFKIRNEMCSNGECNEYKECFNERTGLEAKEIKEKRHNYQGYNGFKEHHREAKLEIFKEKDKGKYYVSENKEKGNEHWRNKREISERNNIQKRGRNRKSPVDDDASQRERLAEQLNRGQLECLVCCEYIKQNDYVWSCSNCYHVLHLKCIKKWAKSSQSENGWRCPACQNVNLVIPEDYFCFCGKTRVPEWNRRDVAHSCGEICARTLSKNSCPHKCTLLCHPGSCPQCTAMVTKYCGCGKTQQTVQCSTQKLLLCESVCGKNLKCGRHKCQSKCHHGECANCEETITQKCYCGKSTKEITCQSNISFTYSCGTICGKLLECGNHTCTKLCHADACESCSLTPDKITTCCCGQTPLIDKRQTCLDSIPVCDKICLKNLKCGQPNNPHKCKAKCHVGDCPVCDLITNVRCRCGNMDREIACKDLISKADDARCEKRCIKKRSCGKHKCNQLCCIEIEHTCPLICSKTLSCGRHKCEQSCHKGRCQPCWRSSFDELYCECGASVIYPPVPCGTRRPTCDRPCSRQHSCGHEILHNCHSELNCPPCTVLTQRWCHGKHELRKAVPCYVNEISCGLSCNKPISCGRHKCITICHSGPCEKPGQQCSQPCTVQRELCGHICAAPCHEGKCPDTPCKEMVKVTCQCGHRTMSRVCAENSKEYQRIASSILASKMADMQLGHSINLEEVFGQGAKKQNQLKTLECNDECKIIERNRRLALGLQIANPDLSGKLMPRYSDFMKQWAKKDPHFCQMVHDKLTELVQLAKTSKQKSRSYSFDSMNKDKRHFIHESCEHFGCESQAYDQEPKRNVVATAVKDKCWLPSYSLLEIVQRENGQRKVPGPMLNTTKADGSVKTILSLPAKKIQKPETTLSIKTSEPEIDYFDYKG

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00217441;
90% Identity: iTF_00217441;
80% Identity: -