Basic Information

Insect: Bombus impatiens
Gene Symbol: stc
Assembly: GCA_000188095.4
Location: NT:131502-139369[+]

Transcription Factor Domain

TF Family: zf-NF-X1
Domain: zf-NF-X1 domain
PFAM: PF01422
TF Group: Zinc-Coordinating Group
Description: This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 2 9.9e+03 -4.4 1.6 15 19 565 569 564 569 0.81

2 12 0.17 8.3e+02 -0.7 0.3 4 10 598 604 597 604 0.94

3 12 2.6e-05 0.13 11.5 14.9 4 19 615 630 613 630 0.93

4 12 2.8e-07 0.0014 17.8 16.4 1 18 666 683 666 684 0.97

5 12 3.4e-08 0.00017 20.7 9.2 1 19 722 740 722 740 0.98

6 12 2.4e-06 0.012 14.8 11.7 4 18 787 801 780 802 0.86

7 12 0.00059 2.9 7.2 8.4 1 11 842 852 842 853 0.97

8 12 2e-10 9.9e-07 27.8 13.8 1 19 869 887 869 887 0.98

9 12 0.51 2.6e+03 -2.2 0.6 5 10 915 920 915 921 0.89

10 12 2 9.9e+03 -8.4 11.4 10 19 934 944 923 944 0.77

11 12 2.2e-07 0.0011 18.1 12.3 1 16 980 995 980 1006 0.85

12 12 8.1e-06 0.04 13.1 13.6 1 19 1012 1031 1012 1031 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	2	9.9e+03	-4.4	1.6	15	19	565	569	564	569	0.81
2	12	0.17	8.3e+02	-0.7	0.3	4	10	598	604	597	604	0.94
3	12	2.6e-05	0.13	11.5	14.9	4	19	615	630	613	630	0.93
4	12	2.8e-07	0.0014	17.8	16.4	1	18	666	683	666	684	0.97
5	12	3.4e-08	0.00017	20.7	9.2	1	19	722	740	722	740	0.98
6	12	2.4e-06	0.012	14.8	11.7	4	18	787	801	780	802	0.86
7	12	0.00059	2.9	7.2	8.4	1	11	842	852	842	853	0.97
8	12	2e-10	9.9e-07	27.8	13.8	1	19	869	887	869	887	0.98
9	12	0.51	2.6e+03	-2.2	0.6	5	10	915	920	915	921	0.89
10	12	2	9.9e+03	-8.4	11.4	10	19	934	944	923	944	0.77
11	12	2.2e-07	0.0011	18.1	12.3	1	16	980	995	980	1006	0.85
12	12	8.1e-06	0.04	13.1	13.6	1	19	1012	1031	1012	1031	0.97

Sequence Information

Coding Sequence: ATGGCTACTTGGGATGGTTCTTATTCAGGGCCAGATGACcaaaattattgtcaaatgTATTCTGATCAAAGCATACCTGGGCCTGCAACAGGAAATTGGacattattttctgataatataaataacgacTATTTGCAACCTAGTCGTGAGTTCTACGTACAAAATGAACCTATATTTGAACAGAATAGTCCGAATGCTTTCTATCATTCGAACGCCAATGTTATGCCAAGTTTGTTGACTACAACCAATAATTATCATGGGCATGTAATAAACCCAGTAGGAAATACACAAGTATTAAATAGTGAGGAGTACTTTCCAAATGTTGTCAAATCTCAACAAGGCTACGTATCTGATGACTCTTGGAAATATGATAGCAATGTAATGAAGAACGAAGATAAATATGCCTCTACAAAGAGAATCACGGAATCTTCAGGCAGCATAGTCAATCACTCAAAATTACATGTCATGGCTGAAGAGTTTGTGCCAAATAATAGAGGATATGGTGatagaagtaaaaataaagagtTAGAGAATACAAAATCTACTAATGATGCAAATTATCGTGTCACGGATAACGGCAAGATATCAGATAAATACTACTTTTGTAATGAGAGTAGGCATGAAGGTAAATAtaacaacaaaaaatgttcTAATTATAAGCACAAAGATAGACATCAAGATCAGTGTTACAAAAAAAATGCATATACAAATTCCTATCAACAGCATGTCAAAACTTCTCATAAACTTCAAGgtaataaatactttactAATAAGTATTATGCAGGAAAATCACAAGTAAATTCAAaagttataaatgaaaatgcatTGGATCAATGTTCAATGACTAATAGTGCtacttgtaataataaaaaggatcctgtaataaatttgaataaaggAGAATCATCATTAAGTATGAATGtatgttcaaataaaaataaaaatttgtcgaatgaGGTTAATGATAAAAGAACTATCATTGGTGATAATAATGTTGTACAAGGTGATAGCATACAGCAGCCCAAAAATTCGTTGAAGGAATTTACTTACTATAATCCTGGTTTCAAACAGACCTACAACAATCATAGAAATTTAAGGAAATATCAGTATAGTGATAGATATAACAGggaaggaaatttttataaagaaaagcGACATCACCATCCAGGATATGGtagagaaaattataataaagaagataaaattaaaataagaaatgaaatgtgCAGTAATGGAGAATGTAGCGAATATAAAGAATGTTTTAACGAGAGAACTGGATTAGAAgcaaaagagataaaagagaaaaggcaCAACTATCAAGGATATAATGGATTTAAAGAACATCATAAGGAAGCTAAACTAGAAATCtttaaagagaaagataaaggTAAATATTATGTGTctgaaaataaagagaaaggaaatgaaCATTGGAGAAATAAAAGGGAAATTagcgaaagaaataatattcagaAACGGGGACAAAATAGGAAGTCACCAGTTGACGATGATGCAAGTCAAAGAGAAAGACTAGCAGAACAGTTGAATAGAGGACAATTAGAATGTTTAGTATGTtgtgaatatattaaacaGAATGATTATGTTTGGTCATGTTCTAACTGCTATCATGTGTTGCATctgaaatgtattaaaaaatgggCAAAGTCATCACAATCtgaaaatggCTGGAGATGTCCAGCATGTCAAAATGTTAACTTAGTAATACCTGAAGATTACTTTTGCTTTTGTGGCAAAACAAGAGTACCTGAATGGAATCGTAGAGATGTTGCACATTCTTGTGGTGAAATTTGCGCTAGAACACTATCCAAAAATAGTTGTCCACATAAGTGCACTCTTCTATGCCATCCTGGATCTTGTCCACAATGTACAGCAATGGTAACAAAATATTGTGGCTGCGGTAAAACTCAGCAAACAGTACAGTGTAGCACTCAGAAATTATTGCTGTGCGAGTCTATATGTggcaaaaatttaaaatgtggCAGGCATAAATGTCAAAGTAAATGTCATCATGGAGAATGTGCAAATTGTGAAGAAACAATAACGCaaaAGTGTTATTGTGGCAAaagtacaaaagaaataacttgCCAGAGTAATATTTCGTTCACATATTCTTGTGGAACTATTTGCGGTAAATTGTTAGAATGTGGTAATCACACTTGTACAAAATTGTGTCATGCGGACGCTTGCGAATCCTGTTCTTTAACTCCTGACAAAATTACAACTTGCTGCTGTGGGCAAACACCATTAATAGATAAGAGACAAACTTGCTTAGATTCGATCCCAGTCTGTGacaaaatatgtttgaaaaatttgaaatgcgGGCAGCCTAATAATCCTCATAAGTGTAAAGTGAAGTGTCACGTAGGGGATTGTCCTGTTTGTGACTTAATTACCAATGTTAGATGCCGCTGCGGAAACATGGATAGGGAAATAGCTTGTAAAGATTTGATATCAAAAGCTGATGATGCACGGTGTGAAAAgagatgtataaaaaaaaggtcTTGTGGGAAGCACAAATGTAACCAATTGTGTTGCATAGAGATAGAACATATTTGTCCATTAATATGTTCTAAAACTTTAAGCTGTGGGAGGCATAAATGTGAACAAAGCTGTCATAAAGgaAGGTGTCAACCTTGTTGGCGAAGTAGTTTTGATGAATTATATTGTGAATGCGGGGCTTCTGTGATATATCCTCCTGTTCCTTGCGGGACAAGAAGACCTACATGTGACAGACCTTGCTCTCGACAGCACTCTTGTGGCCacgaaatattacataattgtCATAGCGAATTAAACTGTCCGCCTTGTACTGTTCTTACTCAAAGATGGTGTCATGGTAAACATGAGTTACGAAAAGCTGTACCATGCTatgttaacgaaatttcatgcGGTTTGTCATGTAACAAGCCCATATCCTGTGGCCGACATAAATGCATTACTATTTGTCATTCTGGACCATGTGAAAAACCAGGACAACAATGTTCTCAGCCTTGTACTGTTCAAAGGGAACTGTGTGGACACATCTGTGCTGCTCCGTGTCACGAGGGTAAATGTCCAGACACACCTTGCAAGGAGATGGTTAAGGTGACGTGTCAGTGTGGGCATAGGACTATGTCGCGTGTTTGCGCCGAAAATTCTAAAGAATATCAGAGAATAGCAAGTAGCATATTAGCTAGTAAAATGGCTGATATGCAATTAGGTCATTCTATTAATTTGGAAGAAGTATTTGGTCAAGGAGCAAAGAGACAGAATCAGTTAAAAACTTTAGAATGCAATgatgaatgtaaaataatagaacGGAATAGAAGATTGGCGTTGGGTTTGCAAATTGTAAATCCAGATTTAAGTGGAAAATTAATGCCTAGATACAGTGATTTTATGAAACAGTGGGCTAAAAAGGATCCTCATTTTTGTCAGATGGTTCATGACAAATTAACCGAGTTGGTTCAATTAGCAAAAACCTCTAAACAAAAATCACGCAGTTATTCCTTTGATAGCATGAACAAAGATAAACGTCATTTTATTCACGAGTCTTGTGAACATTTTGGTTGTGAAAGCCAGGCGTATGATCAGGAGCCAAAAAGAAATGTTGTTGCGACTGCTGTAAAAGATAAGtgTTGGTTACCTAGTTATAGTTTATTAGAGATTGTACAACGGGAAAATGGTCAGAGAAAAGTTCCAGGTCCAATGTTAAATACTACAAAAGCTGATGGATCCGTGAAGACAATATTATCACTGCCTGCGAAAAAGATCCAAAAGCCAGAAACAACATTAAGCATAAAAACATCAGAACCAGAAATagattattttgattataagGGTTAA
Protein Sequence: MATWDGSYSGPDDQNYCQMYSDQSIPGPATGNWTLFSDNINNDYLQPSREFYVQNEPIFEQNSPNAFYHSNANVMPSLLTTTNNYHGHVINPVGNTQVLNSEEYFPNVVKSQQGYVSDDSWKYDSNVMKNEDKYASTKRITESSGSIVNHSKLHVMAEEFVPNNRGYGDRSKNKELENTKSTNDANYRVTDNGKISDKYYFCNESRHEGKYNNKKCSNYKHKDRHQDQCYKKNAYTNSYQQHVKTSHKLQGNKYFTNKYYAGKSQVNSKVINENALDQCSMTNSATCNNKKDPVINLNKGESSLSMNVCSNKNKNLSNEVNDKRTIIGDNNVVQGDSIQQPKNSLKEFTYYNPGFKQTYNNHRNLRKYQYSDRYNREGNFYKEKRHHHPGYGRENYNKEDKIKIRNEMCSNGECSEYKECFNERTGLEAKEIKEKRHNYQGYNGFKEHHKEAKLEIFKEKDKGKYYVSENKEKGNEHWRNKREISERNNIQKRGQNRKSPVDDDASQRERLAEQLNRGQLECLVCCEYIKQNDYVWSCSNCYHVLHLKCIKKWAKSSQSENGWRCPACQNVNLVIPEDYFCFCGKTRVPEWNRRDVAHSCGEICARTLSKNSCPHKCTLLCHPGSCPQCTAMVTKYCGCGKTQQTVQCSTQKLLLCESICGKNLKCGRHKCQSKCHHGECANCEETITQKCYCGKSTKEITCQSNISFTYSCGTICGKLLECGNHTCTKLCHADACESCSLTPDKITTCCCGQTPLIDKRQTCLDSIPVCDKICLKNLKCGQPNNPHKCKVKCHVGDCPVCDLITNVRCRCGNMDREIACKDLISKADDARCEKRCIKKRSCGKHKCNQLCCIEIEHICPLICSKTLSCGRHKCEQSCHKGRCQPCWRSSFDELYCECGASVIYPPVPCGTRRPTCDRPCSRQHSCGHEILHNCHSELNCPPCTVLTQRWCHGKHELRKAVPCYVNEISCGLSCNKPISCGRHKCITICHSGPCEKPGQQCSQPCTVQRELCGHICAAPCHEGKCPDTPCKEMVKVTCQCGHRTMSRVCAENSKEYQRIASSILASKMADMQLGHSINLEEVFGQGAKRQNQLKTLECNDECKIIERNRRLALGLQIVNPDLSGKLMPRYSDFMKQWAKKDPHFCQMVHDKLTELVQLAKTSKQKSRSYSFDSMNKDKRHFIHESCEHFGCESQAYDQEPKRNVVATAVKDKCWLPSYSLLEIVQRENGQRKVPGPMLNTTKADGSVKTILSLPAKKIQKPETTLSIKTSEPEIDYFDYKG

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00217441;
90% Identity: iTF_00217441;
80% Identity: -