Basic Information

Insect: Bombus sonorus
Gene Symbol: stc
Assembly: GCA_029958995.1
Location: JARWAU010000015.1:160841-165621[+]

Transcription Factor Domain

TF Family: zf-NF-X1
Domain: zf-NF-X1 domain
PFAM: PF01422
TF Group: Zinc-Coordinating Group
Description: This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 2 2.7e+04 -4.3 1.6 15 19 521 525 520 525 0.81

2 13 0.16 2.2e+03 -0.6 0.3 4 10 554 560 553 560 0.94

3 13 2.5e-05 0.34 11.5 14.9 4 19 571 586 569 586 0.93

4 13 2.7e-07 0.0037 17.8 16.4 1 18 622 639 622 640 0.97

5 13 3.3e-08 0.00045 20.8 9.2 1 19 678 696 678 696 0.98

6 13 1.3e-05 0.18 12.5 11.5 4 18 743 757 736 758 0.86

7 13 2 2.7e+04 -4.6 1.6 5 10 787 792 787 792 0.90

8 13 0.00057 7.7 7.2 8.4 1 11 798 808 798 809 0.97

9 13 1.9e-10 2.6e-06 27.9 13.8 1 19 825 843 825 843 0.98

10 13 0.5 6.7e+03 -2.2 0.6 5 10 871 876 871 877 0.89

11 13 2 2.7e+04 -8.3 11.4 10 19 890 900 879 900 0.77

12 13 2.2e-07 0.0029 18.2 12.3 1 16 936 951 936 962 0.85

13 13 7.8e-06 0.11 13.2 13.6 1 19 968 987 968 987 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	2	2.7e+04	-4.3	1.6	15	19	521	525	520	525	0.81
2	13	0.16	2.2e+03	-0.6	0.3	4	10	554	560	553	560	0.94
3	13	2.5e-05	0.34	11.5	14.9	4	19	571	586	569	586	0.93
4	13	2.7e-07	0.0037	17.8	16.4	1	18	622	639	622	640	0.97
5	13	3.3e-08	0.00045	20.8	9.2	1	19	678	696	678	696	0.98
6	13	1.3e-05	0.18	12.5	11.5	4	18	743	757	736	758	0.86
7	13	2	2.7e+04	-4.6	1.6	5	10	787	792	787	792	0.90
8	13	0.00057	7.7	7.2	8.4	1	11	798	808	798	809	0.97
9	13	1.9e-10	2.6e-06	27.9	13.8	1	19	825	843	825	843	0.98
10	13	0.5	6.7e+03	-2.2	0.6	5	10	871	876	871	877	0.89
11	13	2	2.7e+04	-8.3	11.4	10	19	890	900	879	900	0.77
12	13	2.2e-07	0.0029	18.2	12.3	1	16	936	951	936	962	0.85
13	13	7.8e-06	0.11	13.2	13.6	1	19	968	987	968	987	0.97

Sequence Information

Coding Sequence: ATGGCTACTTGGGATGGTTCTTATTCAGGACCAGATGACCAAAATTATTGTCAAATGTATTCTGATCAAAGCGTACCTGGGCCTGCAACAGCAAATTGGACATTATTTTCtgataatataaataacgatTATTTACAACCTAGTCGTGAGTTCTATGTACAAAATGAACCTATGTTTGAACAGAATAGTCCAAATGCTTTCTATCATTCGAACACGAATGTTATGCCAAGTTTGTTGACTACAACCAATAATTATCATGGGCATGTAATAAACCCAGTAGGAAATACACAAGTATTAAATAGCGAGGAGTACTTTTCAACTGTTGTCAAATCTCAACAAGGCTGCGTATCTGATGACTCTTGGAAATATGATAACAATCTAATGAAGAACGAAGATGTCTCTACAAAGAGAATAAAGGAATCTTCAGACAGCGTAGTCAATCAATCAAAATTACATGTCATGGCTGAAGAGTTTGTGCCAAATAATAGAGGATATGGTGATAGAAGTAAAAGTAAAGAGTTAGAGAATAGAAAATCTACTAACGATGCAAATGGTTGTGTCAAGGATAATGGCAAGATATCAGATAAATACTTCTTTTGTAATGAGAGTAGGCACGAAGGTAAATATAATAACAGAAAATGTTCTAATTATAAACACAAAGAAAGACAGCAAGATCAGTGTTACAAAAAAAATGCATACACAAGTTCCTATCAACAGCATGTCAAAACTTCTCATAAACTTCAAGGTAATAAATACTTTACTAATAAGTATTATGCAGGAAAATCACAAGTAAATTCAAAAGTTATGAATGAAAATGCATTGGAACAACGTTCAATGACTAATAGTGCTACttgtaataataaaaaggatcctgtaataaatttgaataaaggTGAATCATCATTAAGTATGAATGTATgctcaaataaaaataaaaatttgtcgaaTGAGGTTAATGATAAAAGAACTATCGCTGGTGATAATAATGTACAAGGTGATAGCATACAGCAGCCCAAAAATTCGATGAAGGAATTTACTTACTATAATCCTGGCTTCAAACAGACCTACAATAATCATAGAAATTTAAGGAAATATCGTAATGGAGAATATAACGAATATAAAGAATGTTTTAACGGGAGAACTGGATTAGAAGCAAAAGAGATAAAAGAGAAAAGGCACAACCATCAAGGATATAATGGATTTAAAGAACATCACAAGGAAGCTAAACTAGAAATCTTCAAAGAGAAAGATAAAggtaaatattatgtatatgaaaataaagAGAAGGGAAATGAACATTGGAGGAATAAAAGGGAAATTAGcgaaagaaataatattcagaAACGGGGACAAAATAGAAAGTCACCAGTTGATGATGATGCAAGTCAAAGAGAAAGATTAGCAGAACAGTTGAATAGAGGACAATTAGAATGTTTAGTATGTTGTGAATATATTAAACAGAATGATTATGTTTGGTCATGTTCTAACTGCTATCATGTGTTGCATctgaaatgtattaaaaaatgggCAAAGTCATCACAATCtgaaaatggCTGGAGATGTCCAGCATGTCAAAATGTTAACTTAGTAATTCCTGAAGATTACTTTTGCTTTTGTGGCAAAACAAGAGTACCCGAATGGAATCGTAGAGATGTTGCACATTCTTGCGGTGAAATTTGCGCTAGGACATTATCCAAAAATAGTTGTCCACATAAGTGCACTCTCTTATGCCATCCTGGATCTTGTCCACAATGTACAGCAATGGTAACAAAATATTGTGGCTGTGGTAAAACTCAGCAAACAGTACAGTGTAGTACTCAGAAATTATTGCTGTGTGAATCTATATgtggtaaaaatttaaaatgcGGCAGGCATAAATGTCAAAGTAAATGCCATCATGGAGAATGTGCAAACTGTGAAGAAACAATAAAGCAAAAGTGTTATTGTGGCAAAAGTACAAAAGAAATAACTTGTCAGAGTAATATTTCGTTTACATATTCTTGTGGAACTATTTGCGGTAAATTGTTAGAATGTGGTAATCACACTTGTACAAAATTATGTCATGCGGATGCTTGCGAATCCTGTTCTTTAACTCCTGACAAAATTACAACTTGCTGTTGTGGTCAAACACCATTAACAGATAAGAGACAAACTTGCTTAGATTCAATTCCAGTCTGTGACAAAATctgtttgaaaaatttgaaatgcgGGCAACCTAATAATCCTCATAAGTGTAAAGTGAAGTGTCATATAGGAGATTGTCCTGTTTGTGACTTAATTACCAATGTTAGATGCCGCTGCGGAAACATGGATAGGGAAATAGCTTGTAAAGATTTGATATCAAAAGCTGATGATGCACGGTGTGAAAAGAGATGTATAAAAAAAAGGTCTTGTGGGAAGCACAAATGTAACCAACTGTGTTGTATAGAGATAGAACATATTTGTCCATTGATATGTTCTAAAACTTTAAGCTGTGGGAGGCATAAATGTGAACAAAGTTGTCATAAAGgaAGGTGTCAACCTTGTTGGCGAAGTAGTTTTGATGAATTATACTGTGAATGCGGGGCTTCTGTGATATATCCTCCCGTTCCTTGTGGGACAAGAAGACCTACATGTGACAGGCCTTGCTCTCGACAGCACTCTTGTGGCCACGAAATATTACATAATTGCCATAGCGAATTAAACTGTCCGCCTTGTACTGTTCTTACTCAGAGATGGTGTCATGGTAAACATGAATTACGAAAAGCTGTACCATGCTATGTTAACGAAATTTCATGTGGTTTGTCATGTAACAAGCCCATATCCTGTGGTCGACATAAATGCATTACTATTTGTCATTCTGGACCATGCGAGAAACCAGGGCAACAATGTTCTCAGCCTTGTACCGCTCAAAGGGAACTGTGTGGACACATCTGTGCTGCTCCATGTCACGAGGGTAAATGTCCAGACACACCTTGCAAGGAGATGGTTaagGTGACGTGTCAGTGTGGGCATAGGACTATGTCGCGTGTTTGCGCCGAAAATTCTAAAGAATATCAGAGAATAGCAAGTAGCATATTAGCTAGTAAAATGGCTGATATGCAATTAGGTCATTCTATTAATTTGGAAGAAGTATTTGGTCAAGGAGCAAAGAAGCAGAATCAGTTAAAAACTTTAGAATGCAATGATGAATGTAAAATAATAGAACGGAATAGAAGATTGGCGTTGGGTTTGCAAATTGCAAATCCAGATTTAAGTGGAAAATTAATGCCTAGATACAGTGATTTTATGAAACAGTGGGCTAAAAAGGATCCTCATTTTTGTCAGATGGTTCATGACAAATTAACCGAGTTGGTACAATTAGCAAAAACGTCTAAACAAAAATCACGCAGTTATTCCTTTGATAGCATGAACAAAGATAAACGTCATTTTATTCACGAGTCTTGTGAACATTTTGGTTGTGAAAGCCAGGCATATGATCAGGAGCCAAAAAGAAATGTTGTTGCGACTGCTGTAAAAGATAAGTGTTGGTTACCTAGTTACAGTTTATTAGAGATCGTACAACGGGAAAATGGTCAGAGAAAAGTTCCAGGTCCAATGTTAAATACTACAAAAGCTGATGGGTCCGTGAAGACAATATTATCACTGCCTGCGAAAAAGATCCAAAAGCCAGAAACAACATTAAGCATAAAAACATCAGAACCAGAAATAGATTATTTTGATTATAAGGGTTAA
Protein Sequence: MATWDGSYSGPDDQNYCQMYSDQSVPGPATANWTLFSDNINNDYLQPSREFYVQNEPMFEQNSPNAFYHSNTNVMPSLLTTTNNYHGHVINPVGNTQVLNSEEYFSTVVKSQQGCVSDDSWKYDNNLMKNEDVSTKRIKESSDSVVNQSKLHVMAEEFVPNNRGYGDRSKSKELENRKSTNDANGCVKDNGKISDKYFFCNESRHEGKYNNRKCSNYKHKERQQDQCYKKNAYTSSYQQHVKTSHKLQGNKYFTNKYYAGKSQVNSKVMNENALEQRSMTNSATCNNKKDPVINLNKGESSLSMNVCSNKNKNLSNEVNDKRTIAGDNNVQGDSIQQPKNSMKEFTYYNPGFKQTYNNHRNLRKYRNGEYNEYKECFNGRTGLEAKEIKEKRHNHQGYNGFKEHHKEAKLEIFKEKDKGKYYVYENKEKGNEHWRNKREISERNNIQKRGQNRKSPVDDDASQRERLAEQLNRGQLECLVCCEYIKQNDYVWSCSNCYHVLHLKCIKKWAKSSQSENGWRCPACQNVNLVIPEDYFCFCGKTRVPEWNRRDVAHSCGEICARTLSKNSCPHKCTLLCHPGSCPQCTAMVTKYCGCGKTQQTVQCSTQKLLLCESICGKNLKCGRHKCQSKCHHGECANCEETIKQKCYCGKSTKEITCQSNISFTYSCGTICGKLLECGNHTCTKLCHADACESCSLTPDKITTCCCGQTPLTDKRQTCLDSIPVCDKICLKNLKCGQPNNPHKCKVKCHIGDCPVCDLITNVRCRCGNMDREIACKDLISKADDARCEKRCIKKRSCGKHKCNQLCCIEIEHICPLICSKTLSCGRHKCEQSCHKGRCQPCWRSSFDELYCECGASVIYPPVPCGTRRPTCDRPCSRQHSCGHEILHNCHSELNCPPCTVLTQRWCHGKHELRKAVPCYVNEISCGLSCNKPISCGRHKCITICHSGPCEKPGQQCSQPCTAQRELCGHICAAPCHEGKCPDTPCKEMVKVTCQCGHRTMSRVCAENSKEYQRIASSILASKMADMQLGHSINLEEVFGQGAKKQNQLKTLECNDECKIIERNRRLALGLQIANPDLSGKLMPRYSDFMKQWAKKDPHFCQMVHDKLTELVQLAKTSKQKSRSYSFDSMNKDKRHFIHESCEHFGCESQAYDQEPKRNVVATAVKDKCWLPSYSLLEIVQRENGQRKVPGPMLNTTKADGSVKTILSLPAKKIQKPETTLSIKTSEPEIDYFDYKG

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00217441;
90% Identity: iTF_00217441;
80% Identity: -