Basic Information

Insect: Apis mellifera
Gene Symbol: stc
Assembly: GCA_003254395.2
Location: NC:1289479-1294703[+]

Transcription Factor Domain

TF Family: zf-NF-X1
Domain: zf-NF-X1 domain
PFAM: PF01422
TF Group: Zinc-Coordinating Group
Description: This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 2 9.4e+03 -4.4 1.6 15 19 555 559 554 559 0.81

2 13 0.17 7.8e+02 -0.7 0.3 4 10 588 594 587 594 0.94

3 13 2.6e-05 0.12 11.5 14.9 4 19 605 620 603 620 0.93

4 13 2.6e-07 0.0012 17.9 16.8 1 18 656 673 656 674 0.97

5 13 3.4e-08 0.00016 20.7 9.2 1 19 712 730 712 730 0.98

6 13 2 9.4e+03 -4.6 1.3 6 10 760 764 760 764 0.96

7 13 1.4e-06 0.0064 15.6 12.1 4 18 777 791 770 792 0.86

8 13 1.6 7.5e+03 -3.8 2.0 5 10 821 826 821 826 0.93

9 13 0.00059 2.8 7.2 8.4 1 11 832 842 832 843 0.97

10 13 2.4e-10 1.1e-06 27.6 13.8 1 19 859 877 859 877 0.98

11 13 2 9.4e+03 -7.5 8.9 14 18 929 933 916 934 0.71

12 13 4.3e-07 0.002 17.2 13.6 1 16 970 985 970 996 0.85

13 13 8.1e-06 0.038 13.1 13.6 1 19 1002 1021 1002 1021 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	2	9.4e+03	-4.4	1.6	15	19	555	559	554	559	0.81
2	13	0.17	7.8e+02	-0.7	0.3	4	10	588	594	587	594	0.94
3	13	2.6e-05	0.12	11.5	14.9	4	19	605	620	603	620	0.93
4	13	2.6e-07	0.0012	17.9	16.8	1	18	656	673	656	674	0.97
5	13	3.4e-08	0.00016	20.7	9.2	1	19	712	730	712	730	0.98
6	13	2	9.4e+03	-4.6	1.3	6	10	760	764	760	764	0.96
7	13	1.4e-06	0.0064	15.6	12.1	4	18	777	791	770	792	0.86
8	13	1.6	7.5e+03	-3.8	2.0	5	10	821	826	821	826	0.93
9	13	0.00059	2.8	7.2	8.4	1	11	832	842	832	843	0.97
10	13	2.4e-10	1.1e-06	27.6	13.8	1	19	859	877	859	877	0.98
11	13	2	9.4e+03	-7.5	8.9	14	18	929	933	916	934	0.71
12	13	4.3e-07	0.002	17.2	13.6	1	16	970	985	970	996	0.85
13	13	8.1e-06	0.038	13.1	13.6	1	19	1002	1021	1002	1021	0.97

Sequence Information

Coding Sequence: atggcTACTTGGGATGGTTCTTACTCAGGACCAGATGATCAAAATTGTTACGTTTATCCCGATCAGAATGTTTCTGGAACTACAACAAGAAACTGGACATTATTtcctaataatataaataatgattatttacaaCCTAATCACGAGTTTTATGTACAAAATGAACCtatatttgaacaaaataatccaaatacTTTCTATCAATCAAATACAAATGTCATGTCAAATTTATTGACCACAACCACTTATCATGATCATGTAACAAATTCTGTAAGTAATACAgaagtattaaataatcaagaatattttccaaatgtcGATTCTCagcaatgttatatatatgaaaacaaTTGGAATTctgattatgatttattaaagaataagataaaacatgattctataaaaagaattaaaaagactTCAAGTAACATAAcaaatcattcaaaattaCATGTTATGGCACAAGAATTTGTAccaaataataaagaagatgatgatagaaagaaaaataatgaattattaaatacaaaatctaTTAATGATTCAGATGTttgtattaaagaaaataacaaaaaatcaaataaatatttcttttgtaatgCAAATagacatgaaaaaaaatataataacaaaagaagTTCTAATTATAAACCTAAAGAAGGACAACAAGATCAatgttataaaagaaatacaaataccAATTCTTATCCACAACAAATGAAGACACCTTATAAATTTCTAGGTAATAAATACTTTAccaacaaatattattcaggaaaatctcaaataaattcaaaatatgtaaatgaagATGCATCAGATAAACGTACAATGAATAACAATGATGCTTGTAATAGTAAAAAAGAttctattacaaatttaagtaaaagagaaagagaatcatctttaaatataaataaaaataaaaatttatcaaatgaagACAATGATGAAAGATCTATTATTGCTGATAATATACAGTCTAATGATATATCACaatctaataatctaattaagGAATTAACTTACTATAATTCTGGCTTAAAACAAACTTATAATAATCACAAaagtataagaaaatataatgatagatataatagagaggaaaattataaagaaaagcaATTTCAATATCAAGGATATAgtagagaaaattattataaagaagataaatttaaagtaaaaagcCAAATATGTAACAATGgagaatataatgaatataaagaaaattttagtgAGGAAACTGGATTAGAAACAAaggaagtaaaagaaaaaagacataATTACCAAGGATATAGTGGATTTAAAGAACAtaataaagaaagtaaaatggaaatttttaaagaaaaagataaaaataaacattatgtatttggaaataaagaaaaaggaaatgaacATTGgcgaaataaaagagaaattagtgaaagaaataatatccaaAAACGAGGACAAAATAAAAGATCACCAATtgatGATGATGCAAGTCAAAGAGAAAGATTAACAGAGCAGCTGAATAGAGGGCAATTGGAATGTTTAGTATGttgtgaatatattaaacaaaatgattatatttggtCATGTTCTAATTGCTATCATGTTCTACacttaaaatgtattaaaaaatgggCAAAATCATCGCAAGctgAAAATGGATGGAGATGCCCAGCATgtcaaaatgttaatttaataattcctgAAGATTACTTTTGTTTTTGTGGTAAAACAAAAGCACCTGAATGGAATCGTAGAGATGTTGCACATTCCTGTGGTGAAATTTGTGGTAGAATGttgtcaaaaaataattgtccTCATAAATGCACTCTTTTATGTCATCCAGGATCTTGTCCACAATGCACTGCAATGGTAGCAAAATATTGTGGCTGTGGTAAAACTTTGCAAACAGTGCAATGTAgtgttcataaattattattgtgtgATTCCATATgtgataagaatttaaattgtgGCAGACATAAATGTCAAAAGAAATGTCATCATGGAGAATGTGCAAATTGTGAAGAAACAATAACACAAAaatgTTTTTGTGGTAAAAATACAAGAGAAATAActtgtgaaaataatatttcgcttACATATTCTTGTGAAACAGTTTGtggtaaattattagaatgcGGCAATCATACTTGTACAAAATTATGTCATGCAGATGCTTGTGAATCTTGTTCTTTAATTCCTGAGAAAATTACAACTTGCTGTTGTGGACAAACACCATTAACAGATAAAAGACAAAGTTGTTTAGATCCAATTCCTGtatgtgaaaaaatatgttcgaaaaatttaaagtgtGGACAACCTAatAATCCTCATAAATGTAAAGCAAGATGTCATGAAGGAGATTGTCCTGTTTGTGATTTATCTACAGACGTTAAATGTCGTTGCGGAAATATGGATAGAGAAATAGCttgtaaagatttaatatcaaaagctGATGATGCaagatgtgaaaaaaaatgtataaagaaaagatCTTGTGGCAAGCACAAATGTAATCAATTATGTTGTATAGAAATAGAACATATTTGTCCATTAATTTGTTCTAAAACTTTAAGTTGTGGTAGACATAAATGTGAACAAAGGTGTCATAAagggAGATGTCAACCTTGCTGGCGTAGTAGTTTTGATGAATTATATTGTGAATGTGGATCTTCAGTGATATATCCTCCTGTTCCATGTGGAACACGAAGACCTGTATGTGATAAACCTTGTTCTCGCCAGCATTCTTGTGGACATGAAGTATTGCATAATTGTCATAGTGAAATAACTTGCCCACCTTGTACTGTTCTCACTCAAAGATGGTGTCATGGTAAACACGAATTACGAAAAGCTGTGCCATGTCatgttaatgaaatttcatgtGGTTTATCATGTAATAAACCCATATCTTGTGGTCGACATAAATGTATTACTATTTGTCATCCTGGACCATGTGAAAAACCAGGACAACAGTGTTCTCAGCCTTGCACTACTTTAAGAGAAATGTGTGGACATATTTGTGCTGCTCCATGTCATGAGGGTAAATGTCCAGATACACCTTGTAAGGAAATGGTTaagGTGACATGTCAATGTGGACATAGAACTATGTTTCGTGTTTGTGCCGAAAATTCTAAAGAATATCAAAGAATAGCAAGTAGTATATTAGCTAGTAAAATGGCTGATATGCAACTAGgtcattctattaatttagaagaagTATTTGGTCAAGGagtaaagaaacaaaatcagTTAAAAACTTTAGAATGTAATGatgaatgtaaaataatagaacGGAATAGAAGATTGGCATTAggtttacaaattataaatccaGATTTAAGTGGAAAATTAATGCCTAGATATAGTGATTTTATGAAACAATGGGCTAAGAAAGATCCGCATTTTTGTCAAATGGTTCATGAAAAATTAACAGAGTTGGTTCAATTAGCAAAGATTTCTAAACAAAAATCACGCAGTTATTCTTTTGACAGCATGAATAAAGATAAACGTCATTTCATTCATGAGTCTTGTGAACATTTTGGTTGCGAAAGTCAGGCATATGATCAGGAGCCAAAAAGAAATGTTGTTGCAACTGCTGTAAAAGATaaatgtTGGTTACCTAGTTATAgtttattagaaattgtaCAACGAGAAAATGGTCAAAGAAAAGTTCCAGGTCCAATGTTAAATACTACAAAAACTGATGGATCTGTGaaaaCAATATTATCACTGCCTGCAAAAAAAACTCAAAAACCAGACACACCATCAAGCATAAAAACATCAGAACcagaaatagattattttgattatcaaGGTTAA
Protein Sequence: MATWDGSYSGPDDQNCYVYPDQNVSGTTTRNWTLFPNNINNDYLQPNHEFYVQNEPIFEQNNPNTFYQSNTNVMSNLLTTTTYHDHVTNSVSNTEVLNNQEYFPNVDSQQCYIYENNWNSDYDLLKNKIKHDSIKRIKKTSSNITNHSKLHVMAQEFVPNNKEDDDRKKNNELLNTKSINDSDVCIKENNKKSNKYFFCNANRHEKKYNNKRSSNYKPKEGQQDQCYKRNTNTNSYPQQMKTPYKFLGNKYFTNKYYSGKSQINSKYVNEDASDKRTMNNNDACNSKKDSITNLSKRERESSLNINKNKNLSNEDNDERSIIADNIQSNDISQSNNLIKELTYYNSGLKQTYNNHKSIRKYNDRYNREENYKEKQFQYQGYSRENYYKEDKFKVKSQICNNGEYNEYKENFSEETGLETKEVKEKRHNYQGYSGFKEHNKESKMEIFKEKDKNKHYVFGNKEKGNEHWRNKREISERNNIQKRGQNKRSPIDDDASQRERLTEQLNRGQLECLVCCEYIKQNDYIWSCSNCYHVLHLKCIKKWAKSSQAENGWRCPACQNVNLIIPEDYFCFCGKTKAPEWNRRDVAHSCGEICGRMLSKNNCPHKCTLLCHPGSCPQCTAMVAKYCGCGKTLQTVQCSVHKLLLCDSICDKNLNCGRHKCQKKCHHGECANCEETITQKCFCGKNTREITCENNISLTYSCETVCGKLLECGNHTCTKLCHADACESCSLIPEKITTCCCGQTPLTDKRQSCLDPIPVCEKICSKNLKCGQPNNPHKCKARCHEGDCPVCDLSTDVKCRCGNMDREIACKDLISKADDARCEKKCIKKRSCGKHKCNQLCCIEIEHICPLICSKTLSCGRHKCEQRCHKGRCQPCWRSSFDELYCECGSSVIYPPVPCGTRRPVCDKPCSRQHSCGHEVLHNCHSEITCPPCTVLTQRWCHGKHELRKAVPCHVNEISCGLSCNKPISCGRHKCITICHPGPCEKPGQQCSQPCTTLREMCGHICAAPCHEGKCPDTPCKEMVKVTCQCGHRTMFRVCAENSKEYQRIASSILASKMADMQLGHSINLEEVFGQGVKKQNQLKTLECNDECKIIERNRRLALGLQIINPDLSGKLMPRYSDFMKQWAKKDPHFCQMVHEKLTELVQLAKISKQKSRSYSFDSMNKDKRHFIHESCEHFGCESQAYDQEPKRNVVATAVKDKCWLPSYSLLEIVQRENGQRKVPGPMLNTTKTDGSVKTILSLPAKKTQKPDTPSSIKTSEPEIDYFDYQG

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00217441;
90% Identity: iTF_00141523;
80% Identity: -